miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01064;mir-253;AAGD02012098.1/83849-83750 31234:Caenorhabditis
remanei
Length = 100
Score = 186 bits (94), Expect = 3e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 gttcgagtttccacccttttcacacacctcactaacactaaacacagattgatagatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gttcgagtttccacccttttcacacacctcactaacactaaacacagattgatagatgtt 63
Query: 61 agtaggcgttgtgggaagggcggcgatgacgagc 94
||||||||||||||||||||||||||||||||||
Sbjct: 64 agtaggcgttgtgggaagggcggcgatgacgagc 97
>RF01064;mir-253;CAAC02000488.1/1601400-1601301
6238:Caenorhabditis briggsae
Length = 100
Score = 109 bits (55), Expect = 6e-24
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 2 ttcgagtttccacccttttcacacacctcactaacactaaacacagattgatagatgtta 61
|||||||||| |||| |||||||||||||||||||||| ||||||| |||||||||
Sbjct: 5 ttcgagtttcagtccttctcacacacctcactaacactaactacagatttctagatgtta 64
Query: 62 gtaggcgttgtgggaagggcggcgatgacga 92
|||||||||||||||||||||| ||||||||
Sbjct: 65 gtaggcgttgtgggaagggcggagatgacga 95
>RF01064;mir-253;AF016421.1/10410-10311 6239:Caenorhabditis
elegans
Length = 100
Score = 101 bits (51), Expect = 2e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 16 cttttcacacacctcactaacactaaacacagattgatagatgttagtaggcgttgtggg 75
|||||||||||||||||||||||| | ||| ||| ||||||||||||||||||||||||
Sbjct: 19 cttttcacacacctcactaacactgaccaccgatgcatagatgttagtaggcgttgtggg 78
Query: 76 aagggcggcga 86
|||||||||||
Sbjct: 79 aagggcggcga 89
>RF01064;mir-253;ABEG01006290.1/1306-1406 135651:Caenorhabditis
brenneri
Length = 101
Score = 93.7 bits (47), Expect = 4e-19
Identities = 78/87 (89%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 9 ttccacccttttcacacacctcactaacactaaaca-cagattgatagatgttagtaggc 67
||||||||||||||||||||| |||||||| |||| ||||| || |||||||||||||
Sbjct: 12 ttccacccttttcacacacctgactaacacaaaaccgcagatgtattgatgttagtaggc 71
Query: 68 gttgtgggaagggcggcgatgacgagc 94
||||||||||||| |||||||| ||||
Sbjct: 72 gttgtgggaagggtggcgatgatgagc 98
>RF01064;mir-253;ABLE02006994.1/10968-11066 281687:Caenorhabditis
japonica
Length = 99
Score = 71.9 bits (36), Expect = 1e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 53 tagatgttagtaggcgttgtgggaagggcggcgatg 88
||||||||||||||||||||||||||||||||||||
Sbjct: 55 tagatgttagtaggcgttgtgggaagggcggcgatg 90
