miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00850;mir-259;AAGD02004316.1/7095-6995 31234:Caenorhabditis
remanei
Length = 101
Score = 186 bits (94), Expect = 3e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 agccgacggaacgagtaaatctcatcctaatctggttgacacaacacaaggaagtgctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 agccgacggaacgagtaaatctcatcctaatctggttgacacaacacaaggaagtgctac 62
Query: 61 cgatttggcttgggattgacttgtggaaatggct 94
||||||||||||||||||||||||||||||||||
Sbjct: 63 cgatttggcttgggattgacttgtggaaatggct 96
>RF00850;mir-259;CAAC02000488.1/379598-379700 6238:Caenorhabditis
briggsae
Length = 103
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 aacgagtaaatctcatcctaatctggttg 38
|||||||||||||||||||||||||||||
Sbjct: 12 aacgagtaaatctcatcctaatctggttg 40
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 tgctaccgatttggcttgggattgacttgt 84
|||||||||||||| ||||||||| |||||
Sbjct: 57 tgctaccgatttggtttgggattggcttgt 86
>RF00850;mir-259;ABEG01010726.1/1082-980 135651:Caenorhabditis
brenneri
Length = 103
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 tgctaccgatttggcttgggattgact 81
|||||||||||||||||||||||||||
Sbjct: 57 tgctaccgatttggcttgggattgact 83
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 aacgagtaaatctcatcctaatctggt 36
||||||| |||||||||||||||||||
Sbjct: 12 aacgagttaatctcatcctaatctggt 38
>RF00850;mir-259;Z73973.1/9529-9429 6239:Caenorhabditis elegans
Length = 101
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 aacgagtaaatctcatcctaatctggt 36
|||||||||||||||||||||||||||
Sbjct: 12 aacgagtaaatctcatcctaatctggt 38
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 accgatttggcttgggattgacttgt 84
||||||||||| ||||||||||||||
Sbjct: 59 accgatttggcatgggattgacttgt 84
>RF00850;mir-259;ABLE02005208.1/735-845 281687:Caenorhabditis
japonica
Length = 111
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 acgagtaaatctcatcctaatctggt 36
||||||||||||||||||||||||||
Sbjct: 13 acgagtaaatctcatcctaatctggt 38
