miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00797;mir-355;AAGD02000378.1/7048-7160 31234:Caenorhabditis
remanei
Length = 113
Score = 220 bits (111), Expect = 3e-57
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1 gttgatatttatgtcatttgtcgaatggtttgttttagcctgagctatgtgttattgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gttgatatttatgtcatttgtcgaatggtttgttttagcctgagctatgtgttattgcac 62
Query: 61 atacatagcttcttgttaaaacataccaatcggttaaatgaacctttttga 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 atacatagcttcttgttaaaacataccaatcggttaaatgaacctttttga 113
>RF00797;mir-355;ABEG01002692.1/24539-24424 135651:Caenorhabditis
brenneri
Length = 116
Score = 129 bits (65), Expect = 8e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 23 gaatggtttgttttagcctgagctatgtgttattgcacatacatagcttcttgttaaaac 82
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 26 gaatggtttgttttagcctgagctatgtgttattgcacatacatagctacttgttaaaac 85
Query: 83 ataccaatc 91
|||||||||
Sbjct: 86 ataccaatc 94
>RF00797;mir-355;CAAC02000450.1/748458-748341 6238:Caenorhabditis
briggsae
Length = 118
Score = 103 bits (52), Expect = 5e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 25 atggtttgttttagcctgagctatgtgttattgcacatacatagcttcttgttaaaacat 84
||||||||||||||||||||||||||||||||||| || ||||||| |||| ||||||||
Sbjct: 29 atggtttgttttagcctgagctatgtgttattgcatattcatagctacttgctaaaacat 88
Query: 85 accaatcg 92
||||||||
Sbjct: 89 accaatcg 96
>RF00797;mir-355;Z70037.1/4531-4414 6239:Caenorhabditis elegans
Length = 118
Score = 60.0 bits (30), Expect = 6e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 23 gaatggtttgttttagcctgagctatgtgttat-tgcacatacatagcttcttgttaaaa 81
||||||||||||||||||||||||||| || || | | || |||||||||||| |||||
Sbjct: 25 gaatggtttgttttagcctgagctatgagtcatcggaatatgcatagcttcttgctaaaa 84
Query: 82 cataccaatc 91
||| ||||||
Sbjct: 85 catgccaatc 94
>RF00797;mir-355;ABLE02017385.1/2522-2405 281687:Caenorhabditis
japonica
Length = 118
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 23 gaatggtttgttttagcctgagctatg 49
|||||||||||||||||||||||||||
Sbjct: 27 gaatggtttgttttagcctgagctatg 53
