miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00894;mir-790;AAGD02004629.1/917-847 31234:Caenorhabditis
remanei
Length = 71
Score = 141 bits (71), Expect = 2e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 21 gactgcttggcactcgcgaacaccgcgatcttatcagataaatcgcggagttagccggtg 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gactgcttggcactcgcgaacaccgcgatcttatcagataaatcgcggagttagccggtg 60
Query: 81 gcaaccaggcg 91
|||||||||||
Sbjct: 61 gcaaccaggcg 71
>RF00894;mir-790;ABEG01007585.1/12191-12261 135651:Caenorhabditis
brenneri
Length = 71
Score = 61.9 bits (31), Expect = 2e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 23 ctgcttggcactcgcgaacaccgcgatcttatcagataaatcgcggagttagccggtggc 82
||||||||||||||||||||||||||||| | ||||||||||| |||||| |||||
Sbjct: 3 ctgcttggcactcgcgaacaccgcgatctaactgtataaatcgcggcgttagctcgtggc 62
Query: 83 aaccagg 89
|| ||||
Sbjct: 63 aaacagg 69
>RF00894;mir-790;CAAC02000563.1/419309-419243 6238:Caenorhabditis
briggsae
Length = 67
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 21 gactgcttggcactcgcgaacaccgcg 47
|||||||||||||||||||||||||||
Sbjct: 1 gactgcttggcactcgcgaacaccgcg 27
>RF00894;mir-790;CAAC02000563.1/418688-418615 6238:Caenorhabditis
briggsae
Length = 74
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 24 tgcttggcactcgcgaacaccgcgatc 50
|||||||||||||||||||||||||||
Sbjct: 4 tgcttggcactcgcgaacaccgcgatc 30
>RF00894;mir-790;ABLE02006395.1/386-311 281687:Caenorhabditis
japonica
Length = 76
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 22 actgcttggcactcgcgaacaccgcg 47
||||||||||||||||||||||||||
Sbjct: 2 actgcttggcactcgcgaacaccgcg 27
>RF00894;mir-790;U61944.1/28361-28431 6239:Caenorhabditis elegans
Length = 71
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 25 gcttggcactcgcgaacaccgcgat 49
|||||||||||||||||||||||||
Sbjct: 5 gcttggcactcgcgaacaccgcgat 29
