miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00237;mir-9;ABKE01001679.1/8647-8709 54126:Pristionchus
pacificus
Length = 63
Score = 125 bits (63), Expect = 1e-28
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 18 cgctttggttatcttgctttctgactaaatgtccaaggttcataaagctaggttaccaaa 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgctttggttatcttgctttctgactaaatgtccaaggttcataaagctaggttaccaaa 60
Query: 78 gct 80
|||
Sbjct: 61 gct 63
>RF00237;mir-9;AAQA01000025.1/15457-15396 6279:Brugia malayi
Length = 62
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ttcataaagctaggttaccaaagct 80
|||||||||||||||||||||||||
Sbjct: 38 ttcataaagctaggttaccaaagct 62
>RF00237;mir-9;AAGD02008921.1/11473-11541 31234:Caenorhabditis
remanei
Length = 69
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ttcataaagctaggttaccaaagct 80
|||||||||||||||||||||||||
Sbjct: 45 ttcataaagctaggttaccaaagct 69
>RF00237;mir-9;Z81467.1/13319-13384 6239:Caenorhabditis elegans
Length = 66
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ttcataaagctaggttaccaaagct 80
|||||||||||||||||||||||||
Sbjct: 42 ttcataaagctaggttaccaaagct 66
>RF00237;mir-9;ABLE02000370.1/4844-4906 281687:Caenorhabditis
japonica
Length = 63
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ttcataaagctaggttaccaaagct 80
|||||||||||||||||||||||||
Sbjct: 39 ttcataaagctaggttaccaaagct 63
>RF00237;mir-9;CAAC02000589.1/144634-144698 6238:Caenorhabditis
briggsae
Length = 65
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ttcataaagctaggttaccaaagct 80
|||||||||||||||||||||||||
Sbjct: 41 ttcataaagctaggttaccaaagct 65
>RF00237;mir-9;ABEG01008189.1/7393-7325 135651:Caenorhabditis
brenneri
Length = 69
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ttcataaagctaggttaccaaagct 80
|||||||||||||||||||||||||
Sbjct: 45 ttcataaagctaggttaccaaagct 69
>RF00237;mir-9;ABIR01000787.1/71736-71795 6334:Trichinella
spiralis
Length = 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 tcataaagctaggttaccaaagct 80
||||||||||||||||||||||||
Sbjct: 37 tcataaagctaggttaccaaagct 60
>RF00237;mir-9;ABJB010367147.1/2213-2272 6945:Ixodes scapularis
(black-legged tick)
Length = 60
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 tcataaagctaggttaccaaag 78
||||||||||||||||||||||
Sbjct: 37 tcataaagctaggttaccaaag 58