miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00237;mir-9;ABKE01001679.1/8647-8709 54126:Pristionchus
          pacificus
          Length = 63

 Score =  125 bits (63), Expect = 1e-28
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                      
Query: 18 cgctttggttatcttgctttctgactaaatgtccaaggttcataaagctaggttaccaaa 77
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cgctttggttatcttgctttctgactaaatgtccaaggttcataaagctaggttaccaaa 60

             
Query: 78 gct 80
          |||
Sbjct: 61 gct 63




>RF00237;mir-9;AAQA01000025.1/15457-15396 6279:Brugia malayi
          Length = 62

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 56 ttcataaagctaggttaccaaagct 80
          |||||||||||||||||||||||||
Sbjct: 38 ttcataaagctaggttaccaaagct 62




>RF00237;mir-9;AAGD02008921.1/11473-11541 31234:Caenorhabditis
          remanei
          Length = 69

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 56 ttcataaagctaggttaccaaagct 80
          |||||||||||||||||||||||||
Sbjct: 45 ttcataaagctaggttaccaaagct 69




>RF00237;mir-9;Z81467.1/13319-13384 6239:Caenorhabditis elegans
          Length = 66

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 56 ttcataaagctaggttaccaaagct 80
          |||||||||||||||||||||||||
Sbjct: 42 ttcataaagctaggttaccaaagct 66




>RF00237;mir-9;ABLE02000370.1/4844-4906 281687:Caenorhabditis
          japonica
          Length = 63

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 56 ttcataaagctaggttaccaaagct 80
          |||||||||||||||||||||||||
Sbjct: 39 ttcataaagctaggttaccaaagct 63




>RF00237;mir-9;CAAC02000589.1/144634-144698 6238:Caenorhabditis
          briggsae
          Length = 65

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 56 ttcataaagctaggttaccaaagct 80
          |||||||||||||||||||||||||
Sbjct: 41 ttcataaagctaggttaccaaagct 65




>RF00237;mir-9;ABEG01008189.1/7393-7325 135651:Caenorhabditis
          brenneri
          Length = 69

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 56 ttcataaagctaggttaccaaagct 80
          |||||||||||||||||||||||||
Sbjct: 45 ttcataaagctaggttaccaaagct 69




>RF00237;mir-9;ABIR01000787.1/71736-71795 6334:Trichinella
          spiralis
          Length = 60

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 57 tcataaagctaggttaccaaagct 80
          ||||||||||||||||||||||||
Sbjct: 37 tcataaagctaggttaccaaagct 60




>RF00237;mir-9;ABJB010367147.1/2213-2272 6945:Ixodes scapularis
          (black-legged tick)
          Length = 60

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 tcataaagctaggttaccaaag 78
          ||||||||||||||||||||||
Sbjct: 37 tcataaagctaggttaccaaag 58