miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00838;mir-252;ABKE01000496.1/4965-5072 54126:Pristionchus
pacificus
Length = 108
Score = 206 bits (104), Expect = 4e-53
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 2 atcacctatcactctgtccgggttctaagtagtagtgccgcaggtaaccaacaattgaga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcacctatcactctgtccgggttctaagtagtagtgccgcaggtaaccaacaattgaga 60
Query: 62 ggtttacctatagccttctgcttaacaccttgaagagttgatct 105
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtttacctatagccttctgcttaacaccttgaagagttgatct 104
>RF00838;mir-252;AAQA01000035.1/130050-130151 6279:Brugia malayi
Length = 102
Score = 58.0 bits (29), Expect = 2e-08
Identities = 36/37 (97%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 24 ttctaagtagtagtgccgcaggtaaccaacaattgag 60
||||||||||||||||||||||||| |||||||||||
Sbjct: 22 ttctaagtagtagtgccgcaggtaa-caacaattgag 57
>RF00838;mir-252;AAGD02000357.1/21908-22018 31234:Caenorhabditis
remanei
Length = 111
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 27 taagtagtagtgccgcaggtaacca 51
|||||||||||||||||||||||||
Sbjct: 27 taagtagtagtgccgcaggtaacca 51
>RF00838;mir-252;CAAC02000450.1/1710699-1710587
6238:Caenorhabditis briggsae
Length = 113
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 27 taagtagtagtgccgcaggtaacc 50
||||||||||||||||||||||||
Sbjct: 27 taagtagtagtgccgcaggtaacc 50
>RF00838;mir-252;Z66521.1/2054-1944 6239:Caenorhabditis elegans
Length = 111
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 27 taagtagtagtgccgcaggtaacc 50
||||||||||||||||||||||||
Sbjct: 27 taagtagtagtgccgcaggtaacc 50
>RF00838;mir-252;ABEG01023523.1/4749-4856 135651:Caenorhabditis
brenneri
Length = 108
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 27 taagtagtagtgccgcaggtaacc 50
||||||||||||||||||||||||
Sbjct: 27 taagtagtagtgccgcaggtaacc 50
>RF00838;mir-252;ABIR01001232.1/17830-17935 6334:Trichinella
spiralis
Length = 106
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttctaagtagtagtgccgcaggt 46
|||||||||||||||||||||||
Sbjct: 24 ttctaagtagtagtgccgcaggt 46
>RF00838;mir-252;ABLE02011229.1/3010-3114 281687:Caenorhabditis
japonica
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 taagtagtagtgccgcaggtaac 49
|||||||||||||||||||||||
Sbjct: 27 taagtagtagtgccgcaggtaac 49
>RF00838;mir-252;AAGJ02031023.1/3179-3073 7668:Strongylocentrotus
purpuratus
Length = 107
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 tctaagtagtagtgccgcaggta 47
|||||||||||||||||||||||
Sbjct: 25 tctaagtagtagtgccgcaggta 47
>RF00838;mir-252;ABJB010205097.1/5176-5282 6945:Ixodes scapularis
(black-legged tick)
Length = 107
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 taagtagtagtgccgcaggtaa 48
||||||||||||||||||||||
Sbjct: 27 taagtagtagtgccgcaggtaa 48
