miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01915;mir-2238;ABKE01000098.1/36649-36530 54126:Pristionchus
pacificus
Length = 120
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 ggtaactagtcgatcctctttcccgttcactcttctcgtcagtcgatgattgaatatcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ggtaactagtcgatcctctttcccgttcactcttctcgtcagtcgatgattgaatatcga 71
Query: 61 atgacagatcagtgcgcgagaaggaagactagcttcc 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 72 atgacagatcagtgcgcgagaaggaagactagcttcc 108
>RF01915;mir-2238;ABKE01012537.1/90-209 54126:Pristionchus pacificus
Length = 120
Score = 153 bits (77), Expect = 5e-37
Identities = 92/97 (94%)
Strand = Plus / Plus
Query: 1 ggtaactagtcgatcctctttcccgttcactcttctcgtcagtcgatgattgaatatcga 60
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||
Sbjct: 12 ggtaactagtcgatcctctttcccgttcactcaactcgtcagtcgattattgaatttcga 71
Query: 61 atgacagatcagtgcgcgagaaggaagactagcttcc 97
||||||| |||||||||||||||||||||||||||||
Sbjct: 72 atgacagttcagtgcgcgagaaggaagactagcttcc 108
>RF01915;mir-2238;ABKE01003698.1/3164-3283 54126:Pristionchus
pacificus
Length = 120
Score = 139 bits (70), Expect = 7e-33
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 16 ctctttcccgttcactcttctcgtcagtcgatgattgaatatcgaatgacagatcagtgc 75
||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct: 27 ctctttcccgttcactcttctcgtcagtcgatgatcgaatatagaatgacagaacagtgc 86
Query: 76 gcgagaaggaagactagcttcc 97
||||||||||||||||||||||
Sbjct: 87 gcgagaaggaagactagcttcc 108
>RF01915;mir-2238;ABKE01006091.1/4715-4593 54126:Pristionchus
pacificus
Length = 123
Score = 139 bits (70), Expect = 7e-33
Identities = 93/100 (93%), Gaps = 3/100 (3%)
Strand = Plus / Plus
Query: 1 ggtaactagtcgatcctctttcccgttcactcttctcgtcagtcgatgattgaatatcga 60
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct: 12 ggtaactagtcgatcctctttcccgttcactcatctcgtcaatcgatgattgaatttcga 71
Query: 61 atgacag---atcagtgcgcgagaaggaagactagcttcc 97
|||||| ||||||||||||||||||||||||||||||
Sbjct: 72 gtgacagatcatcagtgcgcgagaaggaagactagcttcc 111
>RF01915;mir-2238;ABKE01000956.1/23514-23395 54126:Pristionchus
pacificus
Length = 120
Score = 137 bits (69), Expect = 3e-32
Identities = 89/93 (95%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 6 ctagtcgatcctctttcccgttcactcttctcgtcagtcgatgattgaatatcgaatgac 65
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 17 ctagtcgatcctctttcccgttcactcttctcgtcagtcgatga-tgaatttcgaatgac 75
Query: 66 agatc-agtgcgcgagaaggaagactagcttcc 97
||| | |||||||||||||||||||||||||||
Sbjct: 76 agaacaagtgcgcgagaaggaagactagcttcc 108
>RF01915;mir-2238;ABKE01003178.1/10932-11051 54126:Pristionchus
pacificus
Length = 120
Score = 123 bits (62), Expect = 4e-28
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 16 ctctttcccgttcactcttctcgtcagtcgatgattgaatatcgaatgacagatcagtgc 75
||||| ||||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct: 27 ctcttccccgttcactcttctcgtcagtcgatgattgaaattcgaatgactgaacagtgc 86
Query: 76 gcgagaaggaagactagcttcc 97
||||||||||||||||||||||
Sbjct: 87 gcgagaaggaagactagcttcc 108
>RF01915;mir-2238;ABKE01006091.1/3873-3753 54126:Pristionchus
pacificus
Length = 121
Score = 123 bits (62), Expect = 4e-28
Identities = 90/98 (91%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 1 ggtaactagtcgatcctctttcccgtt-cactcttctcgtcagtcgatgattgaatatcg 59
||||||||||| ||||||||||| || ||||| |||||||| ||||| ||||||| |||
Sbjct: 12 ggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaatttcg 71
Query: 60 aatgacagatcagtgcgcgagaaggaagactagcttcc 97
||||||||||||||||||||||||||||||||||||||
Sbjct: 72 aatgacagatcagtgcgcgagaaggaagactagcttcc 109
