miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01915;mir-2238;ABKE01000098.1/36649-36530 54126:Pristionchus
pacificus
Length = 120
Score = 200 bits (101), Expect = 3e-51
Identities = 110/113 (97%)
Strand = Plus / Plus
Query: 7 tttctggtatctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaat 66
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7 tttctggtaactagtcgatcctctttcccgttcactcttctcgtcagtcgatgattgaat 66
Query: 67 atcgaatgacagatcagtgcgcgagaaggaagactagcttccgtgatggtgtt 119
||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 67 atcgaatgacagatcagtgcgcgagaaggaagactagcttccgtgatagtgtt 119
>RF01915;mir-2238;ABKE01012537.1/90-209 54126:Pristionchus pacificus
Length = 120
Score = 149 bits (75), Expect = 1e-35
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 8 ttctggtatctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaata 67
|||||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||||
Sbjct: 8 ttctggtaactagtcgatcctctttcccgttcactcaactcgtcagtcgattattgaatt 67
Query: 68 tcgaatgacagatcagtgcgcgagaaggaagactagcttccgt 110
||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 68 tcgaatgacagttcagtgcgcgagaaggaagactagcttccgt 110
>RF01915;mir-2238;ABKE01003698.1/3164-3283 54126:Pristionchus
pacificus
Length = 120
Score = 145 bits (73), Expect = 2e-34
Identities = 97/105 (92%)
Strand = Plus / Plus
Query: 7 tttctggtatctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaat 66
||||||||| |||||| | ||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 7 tttctggtacctagtcttttctctttcccgttcactcttctcgtcagtcgatgatcgaat 66
Query: 67 atcgaatgacagatcagtgcgcgagaaggaagactagcttccgtg 111
|| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 67 atagaatgacagaacagtgcgcgagaaggaagactagcttccgtg 111
>RF01915;mir-2238;ABKE01003178.1/10932-11051 54126:Pristionchus
pacificus
Length = 120
Score = 141 bits (71), Expect = 2e-33
Identities = 98/107 (91%)
Strand = Plus / Plus
Query: 7 tttctggtatctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaat 66
|||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||||
Sbjct: 7 tttctggtatctagtcttttctcttccccgttcactcttctcgtcagtcgatgattgaaa 66
Query: 67 atcgaatgacagatcagtgcgcgagaaggaagactagcttccgtgat 113
||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 67 ttcgaatgactgaacagtgcgcgagaaggaagactagcttccgtgat 113
>RF01915;mir-2238;ABKE01000956.1/23514-23395 54126:Pristionchus
pacificus
Length = 120
Score = 139 bits (70), Expect = 9e-33
Identities = 93/98 (94%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 17 ctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaatatcgaatgac 76
||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 17 ctagtcgatcctctttcccgttcactcttctcgtcagtcgatga-tgaatttcgaatgac 75
Query: 77 agatc-agtgcgcgagaaggaagactagcttccgtgat 113
||| | ||||||||||||||||||||||||||||||||
Sbjct: 76 agaacaagtgcgcgagaaggaagactagcttccgtgat 113
>RF01915;mir-2238;ABKE01006091.1/4715-4593 54126:Pristionchus
pacificus
Length = 123
Score = 133 bits (67), Expect = 6e-31
Identities = 96/105 (91%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 7 tttctggtatctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaat 66
||||||||| ||||||||||||||||||| ||||||| |||||||| |||||||||||||
Sbjct: 7 tttctggtaactagtcgatcctctttcccgttcactcatctcgtcaatcgatgattgaat 66
Query: 67 atcgaatgacag---atcagtgcgcgagaaggaagactagcttcc 108
|||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 67 ttcgagtgacagatcatcagtgcgcgagaaggaagactagcttcc 111
>RF01915;mir-2238;ABKE01006091.1/3873-3753 54126:Pristionchus
pacificus
Length = 121
Score = 121 bits (61), Expect = 2e-27
Identities = 92/101 (91%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 11 tggtatctagtcgatcctctttcccatt-cactcttctcgtcagtcgatgattgaatatc 69
||||| |||||| ||||||||||| || ||||| |||||||| ||||| ||||||| ||
Sbjct: 11 tggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaatttc 70
Query: 70 gaatgacagatcagtgcgcgagaaggaagactagcttccgt 110
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gaatgacagatcagtgcgcgagaaggaagactagcttccgt 111
