miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01915;mir-2238;ABKE01000956.1/23514-23395 54126:Pristionchus
pacificus
Length = 120
Score = 210 bits (106), Expect = 3e-54
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1 ttatgatacctagtcgatcctctttcccgttcactcttctcgtcagtcgatgatgaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ttatgatacctagtcgatcctctttcccgttcactcttctcgtcagtcgatgatgaattt 67
Query: 61 cgaatgacagaacaagtgcgcgagaaggaagactagcttccgtgat 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgaatgacagaacaagtgcgcgagaaggaagactagcttccgtgat 113
>RF01915;mir-2238;ABKE01000098.1/36649-36530 54126:Pristionchus
pacificus
Length = 120
Score = 147 bits (74), Expect = 3e-35
Identities = 94/98 (95%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 10 ctagtcgatcctctttcccgttcactcttctcgtcagtcgatga-tgaatttcgaatgac 68
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 17 ctagtcgatcctctttcccgttcactcttctcgtcagtcgatgattgaatatcgaatgac 76
Query: 69 agaacaagtgcgcgagaaggaagactagcttccgtgat 106
||| | ||||||||||||||||||||||||||||||||
Sbjct: 77 agatc-agtgcgcgagaaggaagactagcttccgtgat 113
>RF01915;mir-2238;ABKE01003698.1/3164-3283 54126:Pristionchus
pacificus
Length = 120
Score = 125 bits (63), Expect = 1e-28
Identities = 92/99 (92%), Gaps = 2/99 (2%)
Strand = Plus / Plus
Query: 7 tacctagtcgatcctctttcccgttcactcttctcgtcagtcgatgat-gaatttcgaat 65
||||||||| | ||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct: 14 tacctagtcttttctctttcccgttcactcttctcgtcagtcgatgatcgaatatagaat 73
Query: 66 gacagaacaagtgcgcgagaaggaagactagcttccgtg 104
|||||||| ||||||||||||||||||||||||||||||
Sbjct: 74 gacagaac-agtgcgcgagaaggaagactagcttccgtg 111
>RF01915;mir-2238;ABKE01003178.1/10932-11051 54126:Pristionchus
pacificus
Length = 120
Score = 119 bits (60), Expect = 8e-27
Identities = 83/88 (94%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 20 ctctttcccgttcactcttctcgtcagtcgatgat-gaatttcgaatgacagaacaagtg 78
||||| ||||||||||||||||||||||||||||| ||| |||||||||| ||||| |||
Sbjct: 27 ctcttccccgttcactcttctcgtcagtcgatgattgaaattcgaatgactgaaca-gtg 85
Query: 79 cgcgagaaggaagactagcttccgtgat 106
||||||||||||||||||||||||||||
Sbjct: 86 cgcgagaaggaagactagcttccgtgat 113
>RF01915;mir-2238;ABKE01006091.1/4715-4593 54126:Pristionchus
pacificus
Length = 123
Score = 119 bits (60), Expect = 8e-27
Identities = 88/95 (92%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 10 ctagtcgatcctctttcccgttcactcttctcgtcagtcgatga-tgaatttcgaatgac 68
||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| ||||
Sbjct: 17 ctagtcgatcctctttcccgttcactcatctcgtcaatcgatgattgaatttcgagtgac 76
Query: 69 agaaca--agtgcgcgagaaggaagactagcttcc 101
||| || |||||||||||||||||||||||||||
Sbjct: 77 agatcatcagtgcgcgagaaggaagactagcttcc 111
>RF01915;mir-2238;ABKE01012537.1/90-209 54126:Pristionchus pacificus
Length = 120
Score = 117 bits (59), Expect = 3e-26
Identities = 88/95 (92%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 10 ctagtcgatcctctttcccgttcactcttctcgtcagtcgatga-tgaatttcgaatgac 68
||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct: 17 ctagtcgatcctctttcccgttcactcaactcgtcagtcgattattgaatttcgaatgac 76
Query: 69 agaacaagtgcgcgagaaggaagactagcttccgt 103
|| | |||||||||||||||||||||||||||||
Sbjct: 77 agttc-agtgcgcgagaaggaagactagcttccgt 110
>RF01915;mir-2238;ABKE01006091.1/3873-3753 54126:Pristionchus
pacificus
Length = 121
Score = 89.7 bits (45), Expect = 7e-18
Identities = 93/105 (88%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 1 ttatgatacctagtcgatcctctttcccgtt-cactcttctcgtcagtcgatgat-gaat 58
||||| || |||||| ||||||||||| || ||||| |||||||| ||||| || ||||
Sbjct: 8 ttatggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaat 67
Query: 59 ttcgaatgacagaacaagtgcgcgagaaggaagactagcttccgt 103
||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 68 ttcgaatgacagatca-gtgcgcgagaaggaagactagcttccgt 111
