miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01899;mir-2241;ABKE01000303.1/39982-40078 54126:Pristionchus
pacificus
Length = 97
Score = 192 bits (97), Expect = 7e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 9 ggtctattcgatattgccttgatcttcaggatccctgtctgaacacagaaattgagtgtt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctattcgatattgccttgatcttcaggatccctgtctgaacacagaaattgagtgtt 60
Query: 69 cgcaaggattcctcaagatcagggcttcgagtcagct 105
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgcaaggattcctcaagatcagggcttcgagtcagct 97
>RF01899;mir-2241;ABKE01007499.1/2558-2462 54126:Pristionchus
pacificus
Length = 97
Score = 125 bits (63), Expect = 1e-28
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 28 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 87
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 20 tgatcttcaggatccctgtctgaacaccgaaattgagtgttcgcaaggattcctcaagat 79
Query: 88 cagggcttcga 98
|||||| ||||
Sbjct: 80 cagggcctcga 90
>RF01899;mir-2241;ABKE01007499.1/2426-2332 54126:Pristionchus
pacificus
Length = 95
Score = 63.9 bits (32), Expect = 4e-10
Identities = 67/76 (88%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 30 atcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagatca 89
|||| |||||||| |||||||| || ||||||| |||| ||||||||||||||| ||||
Sbjct: 22 atctacaggatccttgtctgaa-ac-gaaattgtgtgtatgcaaggattcctcaaaatca 79
Query: 90 gggcttcgagtcagct 105
|| |||||||||||||
Sbjct: 80 ggtcttcgagtcagct 95
