miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01899;mir-2241;ABKE01000303.1/39982-40078 54126:Pristionchus
pacificus
Length = 97
Score = 147 bits (74), Expect = 3e-35
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggtttcctcaagat 79
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 79
Query: 80 cagggcttcgagtcagct 97
||||||||||||||||||
Sbjct: 80 cagggcttcgagtcagct 97
>RF01899;mir-2241;ABKE01007499.1/2558-2462 54126:Pristionchus
pacificus
Length = 97
Score = 147 bits (74), Expect = 3e-35
Identities = 86/90 (95%)
Strand = Plus / Plus
Query: 1 gctcttttcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgtt 60
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 gctctattcgatacgcctctgatcttcaggatccctgtctgaacaccgaaattgagtgtt 60
Query: 61 cgcaaggtttcctcaagatcagggcttcga 90
||||||| ||||||||||||||||| ||||
Sbjct: 61 cgcaaggattcctcaagatcagggcctcga 90
>RF01899;mir-2241;ABKE01007499.1/2426-2332 54126:Pristionchus
pacificus
Length = 95
Score = 69.9 bits (35), Expect = 6e-12
Identities = 79/91 (86%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 7 ttcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaag 66
||||||||||| || |||| |||||||| |||||||| || ||||||| |||| |||||
Sbjct: 7 ttcgatacgcccctaatctacaggatccttgtctgaa-ac-gaaattgtgtgtatgcaag 64
Query: 67 gtttcctcaagatcagggcttcgagtcagct 97
| |||||||| |||||| |||||||||||||
Sbjct: 65 gattcctcaaaatcaggtcttcgagtcagct 95
