miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01899;mir-2241;ABKE01007499.1/2558-2462 54126:Pristionchus
pacificus
Length = 97
Score = 147 bits (74), Expect = 3e-35
Identities = 86/90 (95%)
Strand = Plus / Plus
Query: 1 gctctattcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgtt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 gctctattcgatacgcctctgatcttcaggatccctgtctgaacaccgaaattgagtgtt 60
Query: 61 cacaaggtttcctcaagatcagggcttcga 90
| ||||| ||||||||||||||||| ||||
Sbjct: 61 cgcaaggattcctcaagatcagggcctcga 90
>RF01899;mir-2241;ABKE01000303.1/39982-40078 54126:Pristionchus
pacificus
Length = 97
Score = 139 bits (70), Expect = 7e-33
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcacaaggtttcctcaagat 79
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 79
Query: 80 cagggcttcgagtcagct 97
||||||||||||||||||
Sbjct: 80 cagggcttcgagtcagct 97
>RF01899;mir-2241;ABKE01007499.1/2426-2332 54126:Pristionchus
pacificus
Length = 95
Score = 69.9 bits (35), Expect = 6e-12
Identities = 82/95 (86%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 3 tctattcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgttca 62
||||||||||||||| || |||| |||||||| |||||||| || ||||||| ||||
Sbjct: 3 tctattcgatacgcccctaatctacaggatccttgtctgaa-ac-gaaattgtgtgtatg 60
Query: 63 caaggtttcctcaagatcagggcttcgagtcagct 97
||||| |||||||| |||||| |||||||||||||
Sbjct: 61 caaggattcctcaaaatcaggtcttcgagtcagct 95
