miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AK101131.1/45-161 39947:Oryza sativa Japonica Group
Length = 117
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 91 ctagaatcccttatattatgcgatgaagggagtat 125
|||||||||||||||||||| |||| |||||||||
Sbjct: 38 ctagaatcccttatattatgggatggagggagtat 4
>RF00906;MIR1122;AP003725.3/107083-106927 39947:Oryza sativa
Japonica Group
Length = 157
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1 atactccctctatcccatagtataatggattttg 34
|||||||||| |||||||||||||| ||||||||
Sbjct: 154 atactccctccatcccatagtataagggattttg 121
>RF00906;MIR1122;AP003842.5/108129-107973 39947:Oryza sativa
Japonica Group
Length = 157
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 2 tactccctctatcccatagtataatggattttg 34
|||||||||| ||||||||||||| ||||||||
Sbjct: 5 tactccctctgtcccatagtataagggattttg 37
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 95 aatcccttatattatgcgatgaagggagtattat 128
|||||||||||||||| || | ||||||||||||
Sbjct: 124 aatcccttatattatgggacggagggagtattat 157
>RF00906;MIR1122;AP003932.3/98160-98287 39947:Oryza sativa Japonica
Group
Length = 128
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 2 tactccctctatcccatagtataatggattttg 34
|||||||||| ||||||||||||| ||||||||
Sbjct: 124 tactccctctgtcccatagtataagggattttg 92
>RF01058;MIR806;AACV01010328.1/26487-26725 39947:Oryza sativa
Japonica Group
Length = 239
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 93 agaatcccttatattatgcgatgaagggagta 124
|||||||||||||||||| |||| ||||||||
Sbjct: 33 agaatcccttatattatgggatggagggagta 2
>RF00906;MIR1122;AP008213.1/6090564-6090409 39947:Oryza sativa
Japonica Group
Length = 156
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 86 tccctctagaatcccttatattatgcgatgaagggagtat 125
|||||| | |||||||||||||||| |||| |||||||||
Sbjct: 114 tccctccaaaatcccttatattatgggatggagggagtat 153
>RF00906;MIR1122;AACV01004467.1/8552-8468 39947:Oryza sativa
Japonica Group
Length = 85
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 95 aatcccttatattatgcgatgaagggagtatt 126
|||||||||||||||| |||| ||||||||||
Sbjct: 52 aatcccttatattatgggatggagggagtatt 83
>RF00906;MIR1122;AAAA02015040.1/10135-10264 39946:Oryza sativa
Indica Group
Length = 130
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 86 tccctctagaatcccttatattatgcgatgaagggagta 124
|||||| | |||||||||||||||| ||| |||||||||
Sbjct: 43 tccctccaaaatcccttatattatgggataaagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 86 tccctctagaatcccttatattatgcgatgaagggagta 124
|||||| | |||||||||||||||| || ||||||||||
Sbjct: 88 tccctccaaaatcccttatattatgggacgaagggagta 126
>RF00906;MIR1122;AP002538.2/66452-66609 39947:Oryza sativa Japonica
Group
Length = 158
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 90 tctagaatcccttatattatgcgatgaagggagta 124
|||| ||||||||||||| ||||||| ||||||||
Sbjct: 120 tctaaaatcccttatattttgcgatggagggagta 154
>RF00906;MIR1122;AC226807.1/78158-78249 63629:Oryza minuta
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 95 aatcccttatattatgcgatgaagggagtat 125
|||||||||||||||| |||| |||||||||
Sbjct: 59 aatcccttatattatgagatggagggagtat 89
>RF00906;MIR1122;AACV01001911.1/38308-38471 39947:Oryza sativa
Japonica Group
Length = 164
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 86 tccctctagaatcccttatattatgcgatgaagggagta 124
|||||| | |||||||||||||||| |||| ||||||||
Sbjct: 122 tccctccaaaatcccttatattatgggatggagggagta 160
Score = 44.1 bits (22), Expect = 5e-04
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 2 tactccctctatcccatagtataatggattttgaaaagaagtgataaatctaggacta 59
||||||||| |||||||| ||||| |||||||| | || || ||| |||||||||||
Sbjct: 160 tactccctccatcccataatataagggattttggagggatgtaatatatctaggacta 103
>RF00906;MIR1122;AACV01010673.1/7331-7451 39947:Oryza sativa
Japonica Group
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 86 tccctctagaatcccttatattatgcgatgaagggagta 124
|||||||| |||||||||||||||| |||| || |||||
Sbjct: 43 tccctctaaaatcccttatattatgggatggagagagta 5
>RF00906;MIR1122;AAAA02015085.1/16920-17040 39946:Oryza sativa
Indica Group
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 86 tccctctagaatcccttatattatgcgatgaagggagta 124
|||||||| |||||||||||||||| |||| || |||||
Sbjct: 79 tccctctaaaatcccttatattatgggatggagagagta 117
>RF00906;MIR1122;AP005198.3/50116-50271 39947:Oryza sativa Japonica
Group
Length = 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 86 tccctctagaatcccttatattatgcgatgaagggagta 124
|||||||| |||| ||||||||||| |||| ||||||||
Sbjct: 114 tccctctaaaatctcttatattatgggatggagggagta 152
>RF00906;MIR1122;AL512542.2/7629-7514 4530:Oryza sativa (rice)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 95 aatcccttatattatgcgatgaagggagtat 125
|||||||||||||||| |||| |||||||||
Sbjct: 83 aatcccttatattatgggatggagggagtat 113
>RF00906;MIR1122;ABRL01002629.1/2739-2591 65489:Oryza barthii
Length = 149
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 atactccctctatcccatagtataatggattttga 35
||||||||||| ||||||| ||||| |||||||||
Sbjct: 4 atactccctctgtcccatattataagggattttga 38
>RF00906;MIR1122;AP008210.1/34377663-34377533 39947:Oryza sativa
Japonica Group
Length = 131
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 86 tccctctagaatcccttatattatgcgatgaagggagta 124
|||||| | |||||||||||||||| || ||||||||||
Sbjct: 89 tccctccaaaatcccttatattatgggacgaagggagta 127
>RF00906;MIR1122;CR855038.1/146938-146783 4530:Oryza sativa (rice)
Length = 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 86 tccctctagaatcccttatattatgcgatgaagggagta 124
|||||| | |||||||||||||||| |||| ||||||||
Sbjct: 43 tccctccaaaatcccttatattatgggatggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 86 tccctctagaatcccttatattatgcgatgaagggagta 124
|||||||| |||||||||||||||| || | ||||||||
Sbjct: 114 tccctctaaaatcccttatattatgggacggagggagta 152
>RF00906;MIR1122;AAAA02003361.1/12742-12901 39946:Oryza sativa
Indica Group
Length = 160
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 86 tccctctagaatcccttatattatgcgatgaagggagta 124
|||||| | |||||||||||||||| |||| ||||||||
Sbjct: 118 tccctccaaaatcccttatattatgggatggagggagta 156
Score = 44.1 bits (22), Expect = 5e-04
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 2 tactccctctatcccatagtataatggattttgaaaagaagtgataaatctaggacta 59
||||||||| |||||||| ||||| |||||||| | || || ||| |||||||||||
Sbjct: 156 tactccctccatcccataatataagggattttggagggatgtaatatatctaggacta 99
>RF00906;MIR1122;AK288180.1/1387-1262 39947:Oryza sativa Japonica
Group
Length = 126
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 86 tccctctagaatcccttatattatgcgatgaagggagta 124
|||||||| ||||||||||||||| ||| | ||||||||
Sbjct: 43 tccctctaaaatcccttatattatacgacggagggagta 5
>RF01058;MIR806;AAAA02014047.1/6193-6435 39946:Oryza sativa Indica
Group
Length = 243
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 95 aatcccttatattatgcgatgaagggagta 124
|||||||||||||||| || ||||||||||
Sbjct: 31 aatcccttatattatgggacgaagggagta 2
>RF01058;MIR806;AC129719.2/23163-23401 39947:Oryza sativa Japonica
Group
Length = 239
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 95 aatcccttatattatgcgatgaagggagta 124
|||||||||||||||| |||| ||||||||
Sbjct: 31 aatcccttatattatgggatggagggagta 2
>RF01058;MIR806;AACV01022700.1/19974-19734 39947:Oryza sativa
Japonica Group
Length = 241
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 95 aatcccttatattatgcgatgaagggagta 124
|||||||||||||||| |||| ||||||||
Sbjct: 211 aatcccttatattatgggatggagggagta 240
>RF01058;MIR806;AACV01004109.1/11153-11393 39947:Oryza sativa
Japonica Group
Length = 241
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 95 aatcccttatattatgcgatgaagggagta 124
|||||||||||||||| |||| ||||||||
Sbjct: 31 aatcccttatattatgggatggagggagta 2
>RF00906;MIR1122;AAAA02029602.1/21868-22024 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 95 aatcccttatattatgcgatgaagggagta 124
|||||||||||||||| || ||||||||||
Sbjct: 34 aatcccttatattatgggacgaagggagta 5
>RF00906;MIR1122;AACV01015246.1/27552-27707 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 tactccctctatcccatagtataatggatt 31
|||||||||| ||||||||||||| |||||
Sbjct: 5 tactccctctgtcccatagtataagggatt 34
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 95 aatcccttatattatgcgatgaagggagtattat 128
|||||||||||||||| || | ||||||||||||
Sbjct: 123 aatcccttatattatgggacggagggagtattat 156
>RF00906;MIR1122;AAAA02035091.1/6870-7011 39946:Oryza sativa Indica
Group
Length = 142
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 95 aatcccttatattatgcgatgaagggagta 124
|||||||||||||||| |||| ||||||||
Sbjct: 109 aatcccttatattatgggatggagggagta 138
>RF00906;MIR1122;AAAA02021990.1/33218-33084 39946:Oryza sativa
Indica Group
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 84 cgtccctctagaatcccttatattat 109
|||||||||| |||||||||||||||
Sbjct: 91 cgtccctctaaaatcccttatattat 116
>RF00906;MIR1122;AL731617.3/71366-71211 39947:Oryza sativa Japonica
Group
Length = 156
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 95 aatcccttatattatgcgatgaagggagta 124
|||||||||||||||| || ||||||||||
Sbjct: 34 aatcccttatattatgggacgaagggagta 5
>RF00906;MIR1122;AP003335.4/28125-28259 39947:Oryza sativa
Japonica Group
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 atactccctctatcccatagtataatggattttg 34
||||||||||| ||||||| ||||| ||||||||
Sbjct: 4 atactccctctgtcccataatataagggattttg 37
>RF00906;MIR1122;AACV01024035.1/14460-14553 39947:Oryza sativa
Japonica Group
Length = 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 atactccctctatcccatagtataatggattttg 34
||||||||||| ||||||| ||||| ||||||||
Sbjct: 4 atactccctctctcccataatataagggattttg 37
>RF00906;MIR1122;AL731884.4/124412-124271 4530:Oryza sativa (rice)
Length = 142
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 95 aatcccttatattatgcgatgaagggagta 124
|||||||||||||||| |||| ||||||||
Sbjct: 34 aatcccttatattatgggatggagggagta 5
