miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABRL01001248.1/28987-28884 65489:Oryza barthii
Length = 104
Score = 61.9 bits (31), Expect = 1e-09
Identities = 38/39 (97%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 28 ggatatgtcacatccaccc-aaatcccttataatatgga 65
||||||||||||||||||| |||||||||||||||||||
Sbjct: 55 ggatatgtcacatccacccaaaatcccttataatatgga 17
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 catctacccaaaatcccttataatatgg 28
|||| |||||||||||||||||||||||
Sbjct: 45 catccacccaaaatcccttataatatgg 18
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tacccaaaatcccttataatatgg 28
||||||||||||||||||||||||
Sbjct: 63 tacccaaaatcccttataatatgg 86
>RF00906;MIR1122;AAAA02011838.1/7711-7833 39946:Oryza sativa
Indica Group
Length = 123
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 31 tatgtcacatccacccaaatcccttata 58
||||||||||||||||||||||||||||
Sbjct: 51 tatgtcacatccacccaaatcccttata 24
>RF00906;MIR1122;AP005912.3/116369-116237 39947:Oryza sativa
Japonica Group
Length = 133
Score = 56.0 bits (28), Expect = 6e-08
Identities = 35/36 (97%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 28 ggatatgtcacatccaccc-aaatcccttataatat 62
||||||||||||||||||| ||||||||||||||||
Sbjct: 55 ggatatgtcacatccacccaaaatcccttataatat 20
Score = 50.1 bits (25), Expect = 4e-06
Identities = 35/37 (94%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 28 ggatatgtcacatccaccc-aaatcccttataatatg 63
||||||||||||| ||||| |||||||||||||||||
Sbjct: 79 ggatatgtcacatacacccaaaatcccttataatatg 115
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 catctacccaaaatcccttataatat 26
|||| |||||||||||||||||||||
Sbjct: 45 catccacccaaaatcccttataatat 20
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 acccaaaatcccttataatatg 27
||||||||||||||||||||||
Sbjct: 94 acccaaaatcccttataatatg 115
>RF00906;MIR1122;AAAA02029602.1/21868-22024 39946:Oryza sativa
Indica Group
Length = 157
Score = 52.0 bits (26), Expect = 1e-06
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 28 ggatatgtcacatccaccc-aaatcccttataatatgg 64
||||||||||||||||||| |||||||||||| |||||
Sbjct: 103 ggatatgtcacatccacccaaaatcccttatattatgg 140
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 catctacccaaaatcccttataatatggga 30
|||| ||||||||||||||||| |||||||
Sbjct: 113 catccacccaaaatcccttatattatggga 142
Score = 42.1 bits (21), Expect = 0.001
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 33 tgtcacatccacc-caaatcccttataatatgg 64
||||||||||||| ||||||||||||| |||||
Sbjct: 50 tgtcacatccacctcaaatcccttatattatgg 18
>RF00906;MIR1122;AAAA02020195.1/3874-3739 39946:Oryza sativa
Indica Group
Length = 136
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1 catctacccaaaatcccttataatatggga 30
|||| |||||||||||||||||||||||||
Sbjct: 45 catccacccaaaatcccttataatatggga 16
Score = 48.1 bits (24), Expect = 2e-05
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 34 gtcacatccacccaaa-tcccttataatatgg 64
|||||||||||||||| |||||||||||||||
Sbjct: 49 gtcacatccacccaaaatcccttataatatgg 18
>RF00906;MIR1122;AAAA02023828.1/150-266 39946:Oryza sativa Indica
Group
Length = 117
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1 catctacccaaaatcccttataatatggga 30
|||| |||||||||||||||||||||||||
Sbjct: 45 catccacccaaaatcccttataatatggga 16
Score = 44.1 bits (22), Expect = 2e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 28 ggatatgtcacatccacccaaa-tcccttataatatgg 64
|||| ||| ||||||||||||| |||||||||||||||
Sbjct: 55 ggatgtgttacatccacccaaaatcccttataatatgg 18
>RF00906;MIR1122;AP004994.2/6845-6714 39947:Oryza sativa Japonica
Group
Length = 132
Score = 52.0 bits (26), Expect = 1e-06
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 28 ggatatgtcacatccaccc-aaatcccttataatatgg 64
||||||||||||||||||| |||||||||||| |||||
Sbjct: 51 ggatatgtcacatccacccaaaatcccttatattatgg 14
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 catctacccaaaatcccttataatatggga 30
|||| ||||||||||||||||| |||||||
Sbjct: 41 catccacccaaaatcccttatattatggga 12
>RF00906;MIR1122;AC027658.1/92773-92617 39947:Oryza sativa
Japonica Group
Length = 157
Score = 52.0 bits (26), Expect = 1e-06
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 28 ggatatgtcacatccaccc-aaatcccttataatatgg 64
||||||||||||||||||| |||||||||||| |||||
Sbjct: 55 ggatatgtcacatccacccaaaatcccttatattatgg 18
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 catctacccaaaatcccttataatatggga 30
|||| ||||||||||||||||| |||||||
Sbjct: 45 catccacccaaaatcccttatattatggga 16
>RF00906;MIR1122;AP004706.3/101051-100895 39947:Oryza sativa
Japonica Group
Length = 157
Score = 52.0 bits (26), Expect = 1e-06
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 28 ggatatgtcacatccaccc-aaatcccttataatatgg 64
||||||||||||||||||| |||||||||||| |||||
Sbjct: 103 ggatatgtcacatccacccaaaatcccttatattatgg 140
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 catctacccaaaatcccttataatatggga 30
|||| ||||||||||||||||| |||||||
Sbjct: 113 catccacccaaaatcccttatattatggga 142
>RF00906;MIR1122;ABRL01001363.1/4171-4043 65489:Oryza barthii
Length = 129
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1 catctacccaaaatcccttataatatgggata 32
|||| ||||||||||||||||| |||||||||
Sbjct: 45 catccacccaaaatcccttatattatgggata 14
Score = 44.1 bits (22), Expect = 2e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 28 ggatatgtcacatccaccc-aaatcccttataatatgg 64
|||| |||||||||||||| |||||||||||| |||||
Sbjct: 55 ggatgtgtcacatccacccaaaatcccttatattatgg 18
>RF00906;MIR1122;AACV01010090.1/14054-14174 39947:Oryza sativa
Japonica Group
Length = 121
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 3 tctacccaaaatcccttataatatggga 30
|||||||||||||||||||| |||||||
Sbjct: 43 tctacccaaaatcccttatattatggga 16
>RF00906;MIR1122;AACV01022718.1/10442-10572 39947:Oryza sativa
Japonica Group
Length = 131
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 acccaaaatcccttataatatgg 28
|||||||||||||||||||||||
Sbjct: 93 acccaaaatcccttataatatgg 115
>RF00906;MIR1122;AP004754.3/31680-31527 39947:Oryza sativa Japonica
Group
Length = 154
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 catctacccaaaatcccttataatatgggat 31
|||| |||||||||| |||||||||||||||
Sbjct: 110 catcaacccaaaatctcttataatatgggat 140
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 acccaaaatcccttataatatgggat 31
|||||||||| |||||||||||||||
Sbjct: 41 acccaaaatctcttataatatgggat 16
>RF00906;MIR1122;AACV01015822.1/5399-5292 39947:Oryza sativa
Japonica Group
Length = 108
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 28 ggatatgtcacatccacccaaatcccttata 58
||||||||||| |||||| ||||||||||||
Sbjct: 54 ggatatgtcacctccaccaaaatcccttata 24
>RF00906;MIR1122;AACV01024885.1/21195-21061 39947:Oryza sativa
Japonica Group
Length = 135
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 ggatatgtcacatccacccaaa 49
||||||||||||||||||||||
Sbjct: 81 ggatatgtcacatccacccaaa 102
>RF00906;MIR1122;AAAA02017235.1/6832-6953 39946:Oryza sativa Indica
Group
Length = 122
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 caaaatcccttataatatggga 30
||||||||||||||||||||||
Sbjct: 86 caaaatcccttataatatggga 107
Score = 42.1 bits (21), Expect = 0.001
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 33 tgtcacatccacccaaa-tcccttataatatgg 64
|||||||||||| |||| |||||||||||||||
Sbjct: 73 tgtcacatccactcaaaatcccttataatatgg 105
>RF00906;MIR1122;AP003948.2/13023-12867 39947:Oryza sativa Japonica
Group
Length = 157
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 ggatatgtcacatccacccaaa 49
||||||||||||||||||||||
Sbjct: 103 ggatatgtcacatccacccaaa 124
>RF00906;MIR1122;AAAA02021665.1/3312-3205 39946:Oryza sativa
Indica Group
Length = 108
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 29 gatatgtcacatccacccaaatcccttata 58
|||||||||| |||||| ||||||||||||
Sbjct: 53 gatatgtcacctccaccaaaatcccttata 24
>RF00906;MIR1122;AACV01001688.1/277-406 39947:Oryza sativa
Japonica Group
Length = 130
Score = 44.1 bits (22), Expect = 2e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Minus
Query: 30 atatgtcacatccaccc-aaatcccttata 58
||||||||||||||||| ||||||||||||
Sbjct: 53 atatgtcacatccacccaaaatcccttata 24
>RF00906;MIR1122;ABRL01002629.1/2739-2591 65489:Oryza barthii
Length = 149
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 caaaatcccttataatatggga 30
||||||||||||||||||||||
Sbjct: 37 caaaatcccttataatatggga 16
Score = 42.1 bits (21), Expect = 0.001
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 33 tgtcacatccacccaaa-tcccttataatatgg 64
|||||||||||| |||| |||||||||||||||
Sbjct: 50 tgtcacatccactcaaaatcccttataatatgg 18
>RF00906;MIR1122;AL713936.4/62382-62493 4530:Oryza sativa (rice)
Length = 112
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 catctacccaaaatcccttataatatggga 30
|||| ||||||||||||||||| |||||||
Sbjct: 68 catccacccaaaatcccttatattatggga 97
>RF00906;MIR1122;AP003292.2/51709-51837 39947:Oryza sativa Japonica
Group
Length = 129
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 aaaatcccttataatatgggat 31
||||||||||||||||||||||
Sbjct: 94 aaaatcccttataatatgggat 115
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 10 aaaatcccttataatatggga 30
|||||||||||||||||||||
Sbjct: 36 aaaatcccttataatatggga 16
>RF00906;MIR1122;AL732333.2/10670-10758 4530:Oryza sativa (rice)
Length = 89
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 catctacccaaaatcccttata 22
||||||||||||||||||||||
Sbjct: 45 catctacccaaaatcccttata 24
>RF00906;MIR1122;AP008211.1/6609928-6610066 39947:Oryza sativa
Japonica Group
Length = 139
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 catctacccaaaatcccttataatatggga 30
|||| ||||||||||||||||| |||||||
Sbjct: 95 catccacccaaaatcccttatattatggga 124
>RF00906;MIR1122;AP003746.2/12557-12407 39947:Oryza sativa Japonica
Group
Length = 151
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 catctacccaaaatcccttataatatggga 30
|||| ||||||||||||||||| |||||||
Sbjct: 107 catccacccaaaatcccttatattatggga 136
Score = 42.1 bits (21), Expect = 0.001
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 33 tgtcacatccaccc-aaatcccttataatatgg 64
|||||||||||||| |||||||||||| |||||
Sbjct: 50 tgtcacatccaccccaaatcccttatattatgg 18
Score = 42.1 bits (21), Expect = 0.001
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 33 tgtcacatccaccc-aaatcccttataatatgg 64
|||||||||||||| |||||||||||| |||||
Sbjct: 102 tgtcacatccacccaaaatcccttatattatgg 134
>RF00906;MIR1122;AACV01024035.1/14460-14553 39947:Oryza sativa
Japonica Group
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 catctacccaaaatcccttataatatggga 30
|||| ||||||||||||||||| |||||||
Sbjct: 50 catcgacccaaaatcccttatattatggga 79
>RF00906;MIR1122;AP004190.3/105219-105064 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 catctacccaaaatcccttataatatggga 30
|||||| ||||||||||||||| |||||||
Sbjct: 112 catctatccaaaatcccttatattatggga 141
>RF00906;MIR1122;AAAA02016762.1/20933-20809 39946:Oryza sativa
Indica Group
Length = 125
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 28 ggatatgtcacatccacccaaa 49
||||||||||||||||||||||
Sbjct: 55 ggatatgtcacatccacccaaa 34
>RF00906;MIR1122;AL606607.3/13860-13742 39947:Oryza sativa
Japonica Group
Length = 119
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 catctacccaaaatcccttataatatggga 30
|||| ||||||||||||||||| |||||||
Sbjct: 45 catccacccaaaatcccttatattatggga 16
Score = 44.1 bits (22), Expect = 2e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 28 ggatatgtcacatccaccc-aaatcccttataatatgg 64
|||| |||||||||||||| |||||||||||| |||||
Sbjct: 55 ggatgtgtcacatccacccaaaatcccttatattatgg 18
>RF01058;MIR806;AAAA02022366.1/8512-8275 39946:Oryza sativa Indica
Group
Length = 238
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 acccaaaatcccttataatatggga 30
||||||||||||||||| |||||||
Sbjct: 202 acccaaaatcccttatattatggga 226
>RF00906;MIR1122;AAAA02030950.1/26939-26775 39946:Oryza sativa
Indica Group
Length = 165
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 acccaaaatcccttataatatggga 30
||||||||||||||||| |||||||
Sbjct: 126 acccaaaatcccttatattatggga 150
>RF00906;MIR1122;AAAA02015040.1/10135-10264 39946:Oryza sativa
Indica Group
Length = 130
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 8 ccaaaatcccttataatatgggata 32
||||||||||||||| |||||||||
Sbjct: 38 ccaaaatcccttatattatgggata 14
>RF00906;MIR1122;AAAA02001985.1/22841-22997 39946:Oryza sativa
Indica Group
Length = 157
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 6 acccaaaatcccttataatatggga 30
||||||||||||||||| |||||||
Sbjct: 40 acccaaaatcccttatattatggga 16
>RF00906;MIR1122;AC137993.2/27522-27654 39947:Oryza sativa
Japonica Group
Length = 133
Score = 42.1 bits (21), Expect = 0.001
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 33 tgtcacatccaccc-aaatcccttataatatgg 64
|||||||||||||| |||||||||||| |||||
Sbjct: 50 tgtcacatccaccccaaatcccttatattatgg 18
>RF00906;MIR1122;AAAA02018486.1/27307-27424 39946:Oryza sativa
Indica Group
Length = 118
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 6 acccaaaatcccttataatatggga 30
||||||||||||||||| |||||||
Sbjct: 40 acccaaaatcccttatattatggga 16
>RF00906;MIR1122;AL512542.2/7629-7514 4530:Oryza sativa (rice)
Length = 116
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 cccaaaatcccttataatatgggat 31
|||||||||||||||| ||||||||
Sbjct: 78 cccaaaatcccttatattatgggat 102
>RF00906;MIR1122;AP000364.1/54072-53981 39947:Oryza sativa
Japonica Group
Length = 92
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 atctacccaaaatcccttata 22
|||||||||||||||||||||
Sbjct: 44 atctacccaaaatcccttata 24
>RF00906;MIR1122;AACV01014515.1/3255-3390 39947:Oryza sativa
Japonica Group
Length = 136
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 10 aaaatcccttataatatggga 30
|||||||||||||||||||||
Sbjct: 36 aaaatcccttataatatggga 16
>RF00906;MIR1122;AP004687.2/98890-98773 39947:Oryza sativa Japonica
Group
Length = 118
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 acccaaaatcccttataatatggga 30
||||||||||||||||| |||||||
Sbjct: 79 acccaaaatcccttatattatggga 103
>RF00906;MIR1122;AC123518.2/65954-65790 39947:Oryza sativa
Japonica Group
Length = 165
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 6 acccaaaatcccttataatatggga 30
||||||||||||||||| |||||||
Sbjct: 40 acccaaaatcccttatattatggga 16
>RF00906;MIR1122;AAAA02020362.1/853-722 39946:Oryza sativa Indica
Group
Length = 132
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 acccaaaatcccttataatatggga 30
||||||||||||||||| |||||||
Sbjct: 93 acccaaaatcccttatattatggga 117
