miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AC007789.1/155620-155758 39947:Oryza sativa
Japonica Group
Length = 139
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 6 atactacctccatcccaaaatgtagttacctagtac 41
||||||||||| ||||||||||||| ||||||||||
Sbjct: 136 atactacctccgtcccaaaatgtagctacctagtac 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 93 cgtactaggtagcaaaattttgggatggaggtagta 128
||||||||||||| | ||||||||| ||||||||||
Sbjct: 100 cgtactaggtagctacattttgggacggaggtagta 135
>RF00906;MIR1122;AP008218.1/25040221-25040089 39947:Oryza sativa
Japonica Group
Length = 133
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 7 tactacctccatcccaaaatgtagttacctagtac 41
|||||||||| ||||||||||||| ||||||||||
Sbjct: 5 tactacctccgtcccaaaatgtagctacctagtac 39
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 93 cgtactaggtagcaaaattttgggatggaggtagta 128
||||||||||||| | ||||||||| ||||||||||
Sbjct: 40 cgtactaggtagctacattttgggacggaggtagta 5
>RF00906;MIR1122;AACV01025442.1/16652-16784 39947:Oryza sativa
Japonica Group
Length = 133
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 7 tactacctccatcccaaaatgtagttacctagtac 41
|||||||||| ||||||||||||| ||||||||||
Sbjct: 129 tactacctccgtcccaaaatgtagctacctagtac 95
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 93 cgtactaggtagcaaaattttgggatggaggtagta 128
||||||||||||| | ||||||||| ||||||||||
Sbjct: 94 cgtactaggtagctacattttgggacggaggtagta 129
>RF00906;MIR1122;AAAA02012587.1/870-973 39946:Oryza sativa Indica
Group
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 5 tatactacctccatcccaaaatgtag 30
||||||||||||||||||||||||||
Sbjct: 102 tatactacctccatcccaaaatgtag 77
>RF00906;MIR1122;AL663014.3/90673-90776 39947:Oryza sativa Japonica
Group
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 5 tatactacctccatcccaaaatgtag 30
||||||||||||||||||||||||||
Sbjct: 102 tatactacctccatcccaaaatgtag 77
>RF00906;MIR1122;AAAA02032490.1/12014-11907 39946:Oryza sativa
Indica Group
Length = 108
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 5 tatactacctccatcccaaaatgta 29
|||||||||||||||||||||||||
Sbjct: 106 tatactacctccatcccaaaatgta 82
>RF01058;MIR806;AC232167.1/58295-58055 63629:Oryza minuta
Length = 241
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 atactacctccatcccaaaatgta 29
||||||||||||||||||||||||
Sbjct: 241 atactacctccatcccaaaatgta 218
>RF00906;MIR1122;AP008213.1/941952-942094 39947:Oryza sativa
Japonica Group
Length = 143
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tactacctccatcccaaaatgtag 30
||||||||||||||||||||||||
Sbjct: 5 tactacctccatcccaaaatgtag 28
>RF00906;MIR1122;AC097446.3/172120-171989 39947:Oryza sativa
Japonica Group
Length = 132
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 97 ctaggtagcaaaattttgggatggaggtagta 128
||||||||||| ||||||||| ||||||||||
Sbjct: 36 ctaggtagcaacattttgggacggaggtagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 97 ctaggtagcaaaattttgggatggaggtagta 128
||||||||||||||||||||| ||||| ||||
Sbjct: 97 ctaggtagcaaaattttgggacggaggaagta 128
>RF01058;MIR806;AAAA02021509.1/2000-2215 39946:Oryza sativa Indica
Group
Length = 216
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 atactacctccatcccaaaatgt 28
|||||||||||||||||||||||
Sbjct: 1 atactacctccatcccaaaatgt 23
>RF00906;MIR1122;AACV01014487.1/12034-11914 39947:Oryza sativa
Japonica Group
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 7 tactacctccatcccaaaatgtagttacctagtac 41
|||| ||||| ||||||||||||| ||||||||||
Sbjct: 117 tacttcctccgtcccaaaatgtagctacctagtac 83
>RF00906;MIR1122;AAAA02027287.1/26708-26551 39946:Oryza sativa
Indica Group
Length = 158
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 7 tactacctccatcccaaaatgtagttacctagtac 41
|||||||||||||| ||||| ||| ||||||||||
Sbjct: 154 tactacctccatcctaaaatatagctacctagtac 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 94 gtactaggtagcaaaattttgggatggaggtagta 128
|||||||||||| | ||||| ||||||||||||||
Sbjct: 120 gtactaggtagctatattttaggatggaggtagta 154
>RF00906;MIR1122;AAAA02003552.1/15634-15476 39946:Oryza sativa
Indica Group
Length = 159
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 6 atactacctccatcccaaaatgtagttacctagta 40
||||||||||| ||| ||||||||| |||||||||
Sbjct: 4 atactacctccgtcctaaaatgtagctacctagta 38
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 7 tactacctccatcccaaaatgtagttacctagtac 41
|||| ||||||||||||||| ||| ||||||||||
Sbjct: 155 tacttcctccatcccaaaatatagctacctagtac 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 94 gtactaggtagcaaaattttgggatggaggtagta 128
|||||||||||| | ||||||||||||||| ||||
Sbjct: 121 gtactaggtagctatattttgggatggaggaagta 155
>RF00906;MIR1122;AACV01002049.1/12796-12954 39947:Oryza sativa
Japonica Group
Length = 159
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 6 atactacctccatcccaaaatgtagttacctagta 40
||||||||||| ||| ||||||||| |||||||||
Sbjct: 4 atactacctccgtcctaaaatgtagctacctagta 38
>RF01058;MIR806;AP008218.1/21015660-21015427 39947:Oryza sativa
Japonica Group
Length = 234
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tactacctccatcccaaaatgt 28
||||||||||||||||||||||
Sbjct: 2 tactacctccatcccaaaatgt 23
>RF00906;MIR1122;AC103550.13/157873-158003 39947:Oryza sativa
Japonica Group
Length = 131
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 95 tactaggtagcaaaattttgggatggaggtagta 128
|||||||||||| ||||||||| ||||||||||
Sbjct: 94 tactaggtagcagcattttgggacggaggtagta 127
>RF00906;MIR1122;AACV01007854.1/42879-42749 39947:Oryza sativa
Japonica Group
Length = 131
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 95 tactaggtagcaaaattttgggatggaggtagta 128
|||||||||||| ||||||||| ||||||||||
Sbjct: 94 tactaggtagcagcattttgggacggaggtagta 127
>RF00906;MIR1122;AAAA02005256.1/11994-12118 39946:Oryza sativa
Indica Group
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 95 tactaggtagcaaaattttgggatggaggtagta 128
||||||||||| | ||||||||| ||||||||||
Sbjct: 88 tactaggtagctatattttgggacggaggtagta 121
>RF00906;MIR1122;AP008215.1/7981718-7981570 39947:Oryza sativa
Japonica Group
Length = 149
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 7 tactacctccatcccaaaatgtagttacctagta 40
|||| ||||||||||||||| ||| |||||||||
Sbjct: 145 tacttcctccatcccaaaatatagctacctagta 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 95 tactaggtagcaaaattttgggatggaggtagta 128
||||||||||| | ||||||||||||||| ||||
Sbjct: 112 tactaggtagctatattttgggatggaggaagta 145
>RF00906;MIR1122;AL731784.3/41209-41071 4530:Oryza sativa (rice)
Length = 139
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 7 tactacctccatcccaaaatgtagttacctagta 40
|||||||||||| ||||||| ||| |||||||||
Sbjct: 135 tactacctccattccaaaatatagctacctagta 102
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 95 tactaggtagcaaaattttgggatggaggtagta 128
||||||||||| | ||||||| ||||||||||||
Sbjct: 102 tactaggtagctatattttggaatggaggtagta 135
