miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF02000;MIR1846;AAAA02009653.1/5354-5268 39946:Oryza sativa
Indica Group
Length = 87
Score = 93.7 bits (47), Expect = 4e-19
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 4 tccctccgccgcatacgccaacgaggaggccgggaccgccgga-tcggtgactccgggct 62
|||| ||||||||| |||||| ||||||||| ||||||||| | | ||||||||||| ||
Sbjct: 1 tcccgccgccgcatccgccaaggaggaggcctggaccgccgtaattggtgactccggcct 60
Query: 63 cctcgccggcagatccggcccct 85
|||||||||||||||||||||||
Sbjct: 61 cctcgccggcagatccggcccct 83
>RF02000;MIR1846;AACV01002364.1/1355-1286 39947:Oryza sativa
Japonica Group
Length = 70
Score = 91.7 bits (46), Expect = 1e-18
Identities = 65/70 (92%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 12 ccgcatacgccaacgaggaggccgggaccgccggatc-ggtgactccgggctcctcgccg 70
|||||| ||||||||||||||||||||| | |||||| ||||||||||| ||||||||||
Sbjct: 1 ccgcatccgccaacgaggaggccgggactgtcggatccggtgactccggcctcctcgccg 60
Query: 71 gcagatccgg 80
||||||||||
Sbjct: 61 gcagatccgg 70
>RF02000;MIR1846;AP008213.1/19406916-19406831 39947:Oryza sativa
Japonica Group
Length = 86
Score = 77.8 bits (39), Expect = 2e-14
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 10 cgccgcatacgccaacgaggaggccgggaccgccggat-cggtgactccgggctcctcgc 68
|||| ||| ||||||||||||||||||||||||||||| |||||||| ||| ||| ||||
Sbjct: 7 cgccacatccgccaacgaggaggccgggaccgccggatccggtgacttcggcctcttcgc 66
Query: 69 cggcagatccggcccctct 87
|||||||| |||| ||||
Sbjct: 67 tggcagatctggccactct 85
>RF02000;MIR1846;AC087412.14/69387-69471 39947:Oryza sativa
Japonica Group
Length = 85
Score = 69.9 bits (35), Expect = 5e-12
Identities = 51/55 (92%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 26 gaggaggccgggaccgccggat-cggtgactccgggctcctcgccggcagatccg 79
|||||||||||||||||||||| ||||||| |||| |||||||||||| ||||||
Sbjct: 23 gaggaggccgggaccgccggatccggtgaccccggtctcctcgccggcggatccg 77
>RF02000;MIR1846;AK101387.1/107-181 39947:Oryza sativa Japonica
Group
Length = 75
Score = 63.9 bits (32), Expect = 3e-10
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 14 gcatacgccaacgaggaggccgggaccgccggat-cggtgactccgggctcctcgccggc 72
|||| ||||||||||||||||||||||| ||||| ||||||| |||| ||||||| ||||
Sbjct: 6 gcatccgccaacgaggaggccgggaccgtcggatccggtgaccccggcctcctcgtcggc 65
>RF02000;MIR1846;AACV01005065.1/8234-8319 39947:Oryza sativa
Japonica Group
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 26 gaggaggccgggaccgccggat-cggtgactccgggctcctcgccggcagatccggc 81
|||||||||||| ||||||||| ||||||| |||| ||||||||||| ||||||||
Sbjct: 23 gaggaggccggggccgccggatccggtgaccccggtctcctcgccggtggatccggc 79
>RF02000;MIR1846;AP005393.3/71056-70970 39947:Oryza sativa
Japonica Group
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 14 gcatacgccaacgaggaggccgggaccgccggatc 48
|||| ||||||||||||||||||||||| ||||||
Sbjct: 11 gcatccgccaacgaggaggccgggaccgtcggatc 45
