miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF02000;MIR1846;AACV01002364.1/1355-1286 39947:Oryza sativa
Japonica Group
Length = 70
Score = 115 bits (58), Expect = 7e-26
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 2 ccgcatacgccaacgaggaggccgggaccgccggatccggtgactccggcctcctcgccg 61
|||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 1 ccgcatccgccaacgaggaggccgggactgtcggatccggtgactccggcctcctcgccg 60
Query: 62 gcagatccgg 71
||||||||||
Sbjct: 61 gcagatccgg 70
>RF02000;MIR1846;AP008213.1/19406916-19406831 39947:Oryza sativa
Japonica Group
Length = 86
Score = 95.6 bits (48), Expect = 7e-20
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 9 cgccaacgaggaggccgggaccgccggatccggtgactccggcctcctcgccggcagatc 68
|||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||
Sbjct: 16 cgccaacgaggaggccgggaccgccggatccggtgacttcggcctcttcgctggcagatc 75
>RF02000;MIR1846;AK101387.1/107-181 39947:Oryza sativa Japonica
Group
Length = 75
Score = 87.7 bits (44), Expect = 2e-17
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 4 gcatacgccaacgaggaggccgggaccgccggatccggtgactccggcctcctcgccggc 63
|||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct: 6 gcatccgccaacgaggaggccgggaccgtcggatccggtgaccccggcctcctcgtcggc 65
>RF02000;MIR1846;AAAA02009653.1/5354-5268 39946:Oryza sativa
Indica Group
Length = 87
Score = 85.7 bits (43), Expect = 7e-17
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 1 gccgcatacgccaacgaggaggccgggaccgccggatccggtgactccggcctcctcgcc 60
||||||| |||||| ||||||||| ||||||||| | |||||||||||||||||||||
Sbjct: 8 gccgcatccgccaaggaggaggcctggaccgccgtaattggtgactccggcctcctcgcc 67
Query: 61 ggcagatccgg 71
|||||||||||
Sbjct: 68 ggcagatccgg 78
>RF02000;MIR1846;AC087412.14/69387-69471 39947:Oryza sativa
Japonica Group
Length = 85
Score = 85.7 bits (43), Expect = 7e-17
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 16 gaggaggccgggaccgccggatccggtgactccggcctcctcgccggcagatccg 70
|||||||||||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct: 23 gaggaggccgggaccgccggatccggtgaccccggtctcctcgccggcggatccg 77
>RF02000;MIR1846;AP005393.3/71056-70970 39947:Oryza sativa
Japonica Group
Length = 87
Score = 77.8 bits (39), Expect = 2e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 4 gcatacgccaacgaggaggccgggaccgccggatccggtgactccggcctc 54
|||| ||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 11 gcatccgccaacgaggaggccgggaccgtcggatccggtgaccccggcctc 61
>RF02000;MIR1846;AACV01005065.1/8234-8319 39947:Oryza sativa
Japonica Group
Length = 86
Score = 71.9 bits (36), Expect = 1e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 16 gaggaggccgggaccgccggatccggtgactccggcctcctcgccggcagatccgg 71
|||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||
Sbjct: 23 gaggaggccggggccgccggatccggtgaccccggtctcctcgccggtggatccgg 78
>RF02000;MIR1846;AAAA02031642.1/3210-3295 39946:Oryza sativa
Indica Group
Length = 86
Score = 52.0 bits (26), Expect = 9e-07
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 1 gccgcatacgccaacgaggaggccgggaccgccggatccggtgactccggcctcctcg 58
||||||| | ||||| |||||||| || || || ||||||||||| ||||||||||||
Sbjct: 8 gccgcatccaccaacaaggaggcccgggccaccagatccggtgaccccggcctcctcg 65
>RF02000;MIR1846;AACV01002897.1/82779-82864 39947:Oryza sativa
Japonica Group
Length = 86
Score = 46.1 bits (23), Expect = 6e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 20 aggccgggaccgccggatccggtgactccggcctcctcgccgg 62
||||| || ||||| ||||||||||| |||| |||||||||||
Sbjct: 27 aggcccgggccgccagatccggtgaccccggtctcctcgccgg 69
>RF02000;MIR1846;AP003234.3/152723-152636 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 18 ggaggccgggaccgccggatccggtgactccggcctcctcgc 59
|||||||||| |||| ||||||||| | |||||||||||||
Sbjct: 26 ggaggccggggtcgccagatccggtgtccccggcctcctcgc 67
