miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF02000;MIR1846;AACV01002364.1/1355-1286 39947:Oryza sativa
Japonica Group
Length = 70
Score = 115 bits (58), Expect = 1e-25
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 22 ccgcatccgccaacgaggaggccgggaccaccggatccggtgactccggcctcctcgccg 81
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ccgcatccgccaacgaggaggccgggactgtcggatccggtgactccggcctcctcgccg 60
Query: 82 gcagatccgg 91
||||||||||
Sbjct: 61 gcagatccgg 70
>RF02000;MIR1846;AP008213.1/19406916-19406831 39947:Oryza sativa
Japonica Group
Length = 86
Score = 109 bits (55), Expect = 8e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 20 cgccgcatccgccaacgaggaggccgggaccaccggatccggtgactccggcctcctcgc 79
|||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||
Sbjct: 7 cgccacatccgccaacgaggaggccgggaccgccggatccggtgacttcggcctcttcgc 66
Query: 80 cggcagatccggccactct 98
|||||||| |||||||||
Sbjct: 67 tggcagatctggccactct 85
>RF02000;MIR1846;AAAA02009653.1/5354-5268 39946:Oryza sativa
Indica Group
Length = 87
Score = 97.6 bits (49), Expect = 3e-20
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 17 cgccgccgcatccgccaacgaggaggccgggaccaccggatccggtgactccggcctcct 76
|||||||||||||||||| ||||||||| ||||| ||| | |||||||||||||||||
Sbjct: 4 cgccgccgcatccgccaaggaggaggcctggaccgccgtaattggtgactccggcctcct 63
Query: 77 cgccggcagatccggcc 93
|||||||||||||||||
Sbjct: 64 cgccggcagatccggcc 80
>RF02000;MIR1846;AK101387.1/107-181 39947:Oryza sativa Japonica
Group
Length = 75
Score = 87.7 bits (44), Expect = 3e-17
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 24 gcatccgccaacgaggaggccgggaccaccggatccggtgactccggcctcctcgccggc 83
||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct: 6 gcatccgccaacgaggaggccgggaccgtcggatccggtgaccccggcctcctcgtcggc 65
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 27 tccgccaacgaggaggccgggaccaccggatccg 60
|||||| |||||||||||||| |||||||||||
Sbjct: 68 tccgccgacgaggaggccggggtcaccggatccg 35
>RF02000;MIR1846;AC087412.14/69387-69471 39947:Oryza sativa
Japonica Group
Length = 85
Score = 77.8 bits (39), Expect = 3e-14
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 36 gaggaggccgggaccaccggatccggtgactccggcctcctcgccggcagatccg 90
||||||||||||||| |||||||||||||| |||| |||||||||||| ||||||
Sbjct: 23 gaggaggccgggaccgccggatccggtgaccccggtctcctcgccggcggatccg 77
>RF02000;MIR1846;AP005393.3/71056-70970 39947:Oryza sativa
Japonica Group
Length = 87
Score = 77.8 bits (39), Expect = 3e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 24 gcatccgccaacgaggaggccgggaccaccggatccggtgactccggcctc 74
||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 11 gcatccgccaacgaggaggccgggaccgtcggatccggtgaccccggcctc 61
>RF02000;MIR1846;AAAA02031642.1/3210-3295 39946:Oryza sativa
Indica Group
Length = 86
Score = 71.9 bits (36), Expect = 2e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 19 ccgccgcatccgccaacgaggaggccgggaccaccggatccggtgactccggcctcctcg 78
||||||||||| ||||| |||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 6 ccgccgcatccaccaacaaggaggcccgggccaccagatccggtgaccccggcctcctcg 65
>RF02000;MIR1846;AACV01005065.1/8234-8319 39947:Oryza sativa
Japonica Group
Length = 86
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 36 gaggaggccgggaccaccggatccggtgactccggcctcctcgccggcagatccggc 92
|||||||||||| || |||||||||||||| |||| ||||||||||| ||||||||
Sbjct: 23 gaggaggccggggccgccggatccggtgaccccggtctcctcgccggtggatccggc 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 35 cgaggaggccgggaccaccggatccggtgactccggcctcctcgccggcagatccggc 92
||||||| ||||| |||||||||||| | | ||||||||||| | || |||||||||
Sbjct: 65 cgaggagaccggggtcaccggatccggcggccccggcctcctcactgggagatccggc 8
>RF02000;MIR1846;AAAA02031067.1/51056-50970 39946:Oryza sativa
Indica Group
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 31 ccaacgaggaggccgggaccaccggatccggtgactccggcctcctcgccggcagatcc 89
|||| |||||||| ||| |||||||||||| |||| || |||||||||||| |||||
Sbjct: 18 ccaatgaggaggctggggccaccggatccgatgaccccattctcctcgccggcggatcc 76
>RF02000;MIR1846;AP003234.3/152723-152636 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 35 cgaggaggccgggaccaccggatccggtgactccggcctcctcgccg 81
||||||||||||| ||||||||| || ||| ||||||||| |||||
Sbjct: 66 cgaggaggccggggacaccggatctggcgaccccggcctccccgccg 20
