miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;BAAB01175925.1/123-47 7091:Bombyx mori (domestic
          silkworm)
          Length = 77

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 55 attttctaatactgtcaggtaaagatgtc 83
          |||||||||||||||||||||||||||||
Sbjct: 43 attttctaatactgtcaggtaaagatgtc 71




>RF00241;mir-8;ABJB010621523.1/197-271 6945:Ixodes scapularis
          (black-legged tick)
          Length = 75

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 57 tttctaatactgtcaggtaaagatgtcc 84
          ||||||||||||||||||||||||||||
Sbjct: 42 tttctaatactgtcaggtaaagatgtcc 69




>RF00241;mir-8;AAAB01008986.1/3020387-3020310 180454:Anopheles
          gambiae str. PEST
          Length = 78

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 57 tttctaatactgtcaggtaaagatgtc 83
          |||||||||||||||||||||||||||
Sbjct: 46 tttctaatactgtcaggtaaagatgtc 72




>RF00241;mir-8;AAJJ01001355.1/29616-29540 7070:Tribolium castaneum
          (red flour beetle)
          Length = 77

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 58 ttctaatactgtcaggtaaagatgtcc 84
          |||||||||||||||||||||||||||
Sbjct: 45 ttctaatactgtcaggtaaagatgtcc 71




>RF00241;mir-8;AADG05004155.1/1299-1373 7460:Apis mellifera (honey
          bee)
          Length = 75

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 58 ttctaatactgtcaggtaaagatgtc 83
          ||||||||||||||||||||||||||
Sbjct: 44 ttctaatactgtcaggtaaagatgtc 69




>RF00241;mir-8;AAQB01006282.1/186530-186609 7260:Drosophila
          willistoni
          Length = 80

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 59 tctaatactgtcaggtaaagatgtc 83
          |||||||||||||||||||||||||
Sbjct: 50 tctaatactgtcaggtaaagatgtc 74




>RF00241;mir-8;AAPU01010182.1/5430-5508 7230:Drosophila mojavensis
          Length = 79

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 59 tctaatactgtcaggtaaagatgtc 83
          |||||||||||||||||||||||||
Sbjct: 49 tctaatactgtcaggtaaagatgtc 73




>RF00241;mir-8;AAZO01008551.1/16828-16905 121224:Pediculus humanus
          corporis (human body louse)
          Length = 78

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 58 ttctaatactgtcaggtaaagatgtcc 84
          ||||||||||||||||||| |||||||
Sbjct: 46 ttctaatactgtcaggtaatgatgtcc 72




>RF00241;mir-8;ABLF01004189.1/21301-21379 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 79

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 59 tctaatactgtcaggtaaagatgtcc 84
          |||||||||||||||||| |||||||
Sbjct: 48 tctaatactgtcaggtaatgatgtcc 73