miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF02000;MIR1846;AK101387.1/107-181 39947:Oryza sativa Japonica
Group
Length = 75
Score = 111 bits (56), Expect = 1e-24
Identities = 70/72 (97%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 1 gatgcatccgccaacgaggaggccgggaccgtcggatccggctga-cccggcctcctcgt 59
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 3 gatgcatccgccaacgaggaggccgggaccgtcggatccgg-tgaccccggcctcctcgt 61
Query: 60 cggcggagggga 71
||||||||||||
Sbjct: 62 cggcggagggga 73
Score = 48.1 bits (24), Expect = 1e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 7 tccgccaacgaggaggccgggaccgtcggatccggctgacccggcctcctcgtcggcgga 66
|||||| |||||||||||||| | |||||||| | | |||||||||||||| ||||||
Sbjct: 68 tccgccgacgaggaggccggggtcaccggatccgacggtcccggcctcctcgttggcgga 9
>RF02000;MIR1846;AP005393.3/71056-70970 39947:Oryza sativa
Japonica Group
Length = 87
Score = 81.8 bits (41), Expect = 1e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 1 gatgcatccgccaacgaggaggccgggaccgtcggatccgg 41
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gatgcatccgccaacgaggaggccgggaccgtcggatccgg 48
>RF02000;MIR1846;AACV01002364.1/1355-1286 39947:Oryza sativa
Japonica Group
Length = 70
Score = 73.8 bits (37), Expect = 2e-13
Identities = 57/61 (93%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 4 gcatccgccaacgaggaggccgggaccgtcggatccggctgac-ccggcctcctcgtcgg 62
|||||||||||||||||||||||||| ||||||||||| |||| |||||||||||| |||
Sbjct: 3 gcatccgccaacgaggaggccgggactgtcggatccgg-tgactccggcctcctcgccgg 61
Query: 63 c 63
|
Sbjct: 62 c 62
>RF02000;MIR1846;AP008213.1/19406916-19406831 39947:Oryza sativa
Japonica Group
Length = 86
Score = 65.9 bits (33), Expect = 6e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 5 catccgccaacgaggaggccgggaccgtcggatccgg 41
||||||||||||||||||||||||||| |||||||||
Sbjct: 12 catccgccaacgaggaggccgggaccgccggatccgg 48
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 33 cggatccggctgacccggcctcctcgtcggcgga 66
|||||||||| | |||||||||||||| ||||||
Sbjct: 47 cggatccggcggtcccggcctcctcgttggcgga 14
>RF02000;MIR1846;AC087412.14/69387-69471 39947:Oryza sativa
Japonica Group
Length = 85
Score = 48.1 bits (24), Expect = 1e-05
Identities = 47/52 (90%), Gaps = 2/52 (3%)
Strand = Plus / Plus
Query: 16 gaggaggccgggaccgtcggatccggctga-cccggcctcctcgtcggcgga 66
|||||||||||||||| ||||||||| ||| ||||| ||||||| |||||||
Sbjct: 23 gaggaggccgggaccgccggatccgg-tgaccccggtctcctcgccggcgga 73
>RF02000;MIR1846;AAAA02013358.1/20496-20582 39946:Oryza sativa
Indica Group
Length = 87
Score = 42.1 bits (21), Expect = 9e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 10 gccaacgaggaggccgggaccgtcggatccggc 42
|||||||||||||||||| ||||| |||||||
Sbjct: 17 gccaacgaggaggccggggacgtcgaatccggc 49
