miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00726;mir-87;ABIR01000026.1/135133-135044 6334:Trichinella
spiralis
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 aaggtgagcaaagtttcaggtgt 80
|||||||||||||||||||||||
Sbjct: 49 aaggtgagcaaagtttcaggtgt 71
>RF00726;mir-87;AADG05004934.1/36715-36606 7460:Apis mellifera
(honey bee)
Length = 110
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 aaggtgagcaaagtttcaggtgt 80
|||||||||||||||||||||||
Sbjct: 69 aaggtgagcaaagtttcaggtgt 91
>RF00726;mir-87;ABLG01001644.1/18434-18344 6305:Meloidogyne hapla
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 aggtgagcaaagtttcaggtgt 80
||||||||||||||||||||||
Sbjct: 52 aggtgagcaaagtttcaggtgt 73
>RF00726;mir-87;CABB01000990.1/14418-14510 6306:Meloidogyne
incognita (southern root-knot nematode)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 aggtgagcaaagtttcaggtgt 80
||||||||||||||||||||||
Sbjct: 54 aggtgagcaaagtttcaggtgt 75
>RF00726;mir-87;ABLA01015850.1/979-1068 51029:Heterodera glycines
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 aggtgagcaaagtttcaggtgt 80
||||||||||||||||||||||
Sbjct: 51 aggtgagcaaagtttcaggtgt 72
>RF00726;mir-87;AAQA01000239.1/18231-18323 6279:Brugia malayi
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 aggtgagcaaagtttcaggtgt 80
||||||||||||||||||||||
Sbjct: 53 aggtgagcaaagtttcaggtgt 74
>RF00726;mir-87;ABLE02009534.1/2277-2182 281687:Caenorhabditis
japonica
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 aggtgagcaaagtttcaggtgt 80
||||||||||||||||||||||
Sbjct: 57 aggtgagcaaagtttcaggtgt 78
>RF00726;mir-87;AAGD02011068.1/44388-44291 31234:Caenorhabditis
remanei
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 aggtgagcaaagtttcaggtgt 80
||||||||||||||||||||||
Sbjct: 58 aggtgagcaaagtttcaggtgt 79
>RF00726;mir-87;AC084645.1/38319-38223 6238:Caenorhabditis
briggsae
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 aggtgagcaaagtttcaggtgt 80
||||||||||||||||||||||
Sbjct: 57 aggtgagcaaagtttcaggtgt 78
>RF00726;mir-87;ABLF01044406.1/474-379 7029:Acyrthosiphon pisum
(pea aphid)
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 aggtgagcaaagtttcaggtgt 80
||||||||||||||||||||||
Sbjct: 56 aggtgagcaaagtttcaggtgt 77
>RF00726;mir-87;ABJB010390701.1/1252-1163 6945:Ixodes scapularis
(black-legged tick)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 aggtgagcaaagtttcaggtgt 80
||||||||||||||||||||||
Sbjct: 51 aggtgagcaaagtttcaggtgt 72
