miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF02000;MIR1846;AK101387.1/107-181 39947:Oryza sativa Japonica
Group
Length = 75
Score = 135 bits (68), Expect = 8e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 gatgcatccgccaacgaggaggccgggancgtcggatccggtgaccccggcctcctcgtc 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3 gatgcatccgccaacgaggaggccgggaccgtcggatccggtgaccccggcctcctcgtc 62
Query: 61 ggcggagggga 71
|||||||||||
Sbjct: 63 ggcggagggga 73
Score = 42.1 bits (21), Expect = 9e-04
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 7 tccgccaacgaggaggccgggancgtcggatccggtgaccccggcctcctcgtcggcgga 66
|||||| |||||||||||||| | |||||||| | |||||||||||||| ||||||
Sbjct: 68 tccgccgacgaggaggccggggtcaccggatccgacggtcccggcctcctcgttggcgga 9
>RF02000;MIR1846;AP005393.3/71056-70970 39947:Oryza sativa
Japonica Group
Length = 87
Score = 101 bits (51), Expect = 1e-21
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 1 gatgcatccgccaacgaggaggccgggancgtcggatccggtgaccccggcctc 54
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 8 gatgcatccgccaacgaggaggccgggaccgtcggatccggtgaccccggcctc 61
>RF02000;MIR1846;AACV01002364.1/1355-1286 39947:Oryza sativa
Japonica Group
Length = 70
Score = 89.7 bits (45), Expect = 4e-18
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 4 gcatccgccaacgaggaggccgggancgtcggatccggtgaccccggcctcctcgtcggc 63
||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||
Sbjct: 3 gcatccgccaacgaggaggccgggactgtcggatccggtgactccggcctcctcgccggc 62
>RF02000;MIR1846;AC087412.14/69387-69471 39947:Oryza sativa
Japonica Group
Length = 85
Score = 71.9 bits (36), Expect = 1e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 16 gaggaggccgggancgtcggatccggtgaccccggcctcctcgtcggcgga 66
||||||||||||| || |||||||||||||||||| ||||||| |||||||
Sbjct: 23 gaggaggccgggaccgccggatccggtgaccccggtctcctcgccggcgga 73
>RF02000;MIR1846;AP008213.1/19406916-19406831 39947:Oryza sativa
Japonica Group
Length = 86
Score = 69.9 bits (35), Expect = 4e-12
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 5 catccgccaacgaggaggccgggancgtcggatccggtgaccccggcctc 54
|||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct: 12 catccgccaacgaggaggccgggaccgccggatccggtgacttcggcctc 61
>RF02000;MIR1846;AAAA02031642.1/3210-3295 39946:Oryza sativa
Indica Group
Length = 86
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 35 gatccggtgaccccggcctcctcgtcggcgga 66
||||||||||||||||||||||||||| ||||
Sbjct: 42 gatccggtgaccccggcctcctcgtcgacgga 73
>RF02000;MIR1846;AACV01005065.1/8234-8319 39947:Oryza sativa
Japonica Group
Length = 86
Score = 56.0 bits (28), Expect = 6e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 16 gaggaggccgggancgtcggatccggtgaccccggcctcctcg 58
|||||||||||| || |||||||||||||||||| |||||||
Sbjct: 23 gaggaggccggggccgccggatccggtgaccccggtctcctcg 65
>RF02000;MIR1846;AP003234.3/152723-152636 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 2e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 18 ggaggccgggancgtcggatccggtgaccccggcctcctcg 58
|||||||||| || | ||||||||| ||||||||||||||
Sbjct: 26 ggaggccggggtcgccagatccggtgtccccggcctcctcg 66
>RF02000;MIR1846;AAAA02013358.1/20496-20582 39946:Oryza sativa
Indica Group
Length = 87
Score = 42.1 bits (21), Expect = 9e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 10 gccaacgaggaggccgggancgtcggatccgg 41
|||||||||||||||||| ||||| ||||||
Sbjct: 17 gccaacgaggaggccggggacgtcgaatccgg 48
>RF02000;MIR1846;AAAA02009653.1/5354-5268 39946:Oryza sativa
Indica Group
Length = 87
Score = 42.1 bits (21), Expect = 9e-04
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 4 gcatccgccaacgaggaggccgggancgtcggatccggtgaccccggcctcctcgtcggc 63
||||||||||| ||||||||| ||| || || | |||||| |||||||||||| ||||
Sbjct: 11 gcatccgccaaggaggaggcctggaccgccgtaattggtgactccggcctcctcgccggc 70
