miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00754;mir-279;ABJB010738028.1/1547-1632 6945:Ixodes scapularis
(black-legged tick)
Length = 86
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 58 tcatgactagatccacactcatccacagaagcgg 91
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Sbjct: 50 tcatgactagatccacactcatccatagaagcgg 83
>RF00754;mir-279;AAJJ01000939.1/8868-8954 7070:Tribolium castaneum
(red flour beetle)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tcatgactagatccacactcatcca 82
|||||||||||||||||||||||||
Sbjct: 51 tcatgactagatccacactcatcca 75
>RF00754;mir-279;ABLF01005773.1/5502-5409 7029:Acyrthosiphon pisum
(pea aphid)
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 catgactagatccacactcatcca 82
||||||||||||||||||||||||
Sbjct: 59 catgactagatccacactcatcca 82
>RF00754;mir-279;BABH01023670.1/7511-7596 7091:Bombyx mori
(domestic silkworm)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 catgactagatccacactcatcca 82
||||||||||||||||||||||||
Sbjct: 51 catgactagatccacactcatcca 74
>RF00948;mir-996;AADG05007607.1/6578-6670 7460:Apis mellifera
(honey bee)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 tgactagatccacactcatcca 82
||||||||||||||||||||||
Sbjct: 58 tgactagatccacactcatcca 79
>RF00754;mir-279;AADG05007607.1/6579-6668 7460:Apis mellifera
(honey bee)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 tgactagatccacactcatcca 82
||||||||||||||||||||||
Sbjct: 57 tgactagatccacactcatcca 78
