miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00239;mir-124;AAWT01083931.1/8247-8331 79327:Schmidtea
mediterranea
Length = 85
Score = 167 bits (84), Expect = 3e-41
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 5 tatattcatgaagcattaaccctgttgtcttagatagtttattacaaaacatttaaggca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatattcatgaagcattaaccctgttgtcttagatagtttattacaaaacatttaaggca 60
Query: 65 cgcggtgaatgccatgtgaaatgg 88
||||||||||||||||||||||||
Sbjct: 61 cgcggtgaatgccatgtgaaatgg 84
>RF00239;mir-124;AAGJ02120869.1/14315-14397
7668:Strongylocentrotus purpuratus
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 50 aaaacatttaaggcacgcggtgaatgcca 78
|||||| ||||||||||||||||||||||
Sbjct: 43 aaaacaattaaggcacgcggtgaatgcca 71
>RF00239;mir-124;AC189672.3/51235-51156 6334:Trichinella spiralis
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttaaggcacgcggtgaatgcca 78
||||||||||||||||||||||
Sbjct: 48 ttaaggcacgcggtgaatgcca 69
>RF00239;mir-124;AAIY01443585.1/551-630 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttaaggcacgcggtgaatgcca 78
||||||||||||||||||||||
Sbjct: 48 ttaaggcacgcggtgaatgcca 69
>RF00239;mir-124;AAWZ01041803.1/11566-11646 28377:Anolis
carolinensis (green anole)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttaaggcacgcggtgaatgcca 78
||||||||||||||||||||||
Sbjct: 49 ttaaggcacgcggtgaatgcca 70
>RF00239;mir-124;AAWZ01017180.1/15233-15154 28377:Anolis
carolinensis (green anole)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttaaggcacgcggtgaatgcca 78
||||||||||||||||||||||
Sbjct: 48 ttaaggcacgcggtgaatgcca 69
>RF00239;mir-124;BX248497.11/64645-64566 7955:Danio rerio
(zebrafish)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttaaggcacgcggtgaatgcca 78
||||||||||||||||||||||
Sbjct: 48 ttaaggcacgcggtgaatgcca 69
>RF00239;mir-124;BX324109.8/64997-64917 7955:Danio rerio
(zebrafish)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttaaggcacgcggtgaatgcca 78
||||||||||||||||||||||
Sbjct: 49 ttaaggcacgcggtgaatgcca 70
>RF00239;mir-124;BX511178.6/169756-169675 7955:Danio rerio
(zebrafish)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttaaggcacgcggtgaatgcca 78
||||||||||||||||||||||
Sbjct: 50 ttaaggcacgcggtgaatgcca 71
>RF00239;mir-124;AANH01003936.1/69725-69645 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttaaggcacgcggtgaatgcca 78
||||||||||||||||||||||
Sbjct: 49 ttaaggcacgcggtgaatgcca 70
>RF00239;mir-124;AANH01002585.1/13981-13901 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttaaggcacgcggtgaatgcca 78
||||||||||||||||||||||
Sbjct: 49 ttaaggcacgcggtgaatgcca 70
>RF00239;mir-124;BAAF04105842.1/7834-7753 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttaaggcacgcggtgaatgcca 78
||||||||||||||||||||||
Sbjct: 50 ttaaggcacgcggtgaatgcca 71
>RF00239;mir-124;BAAF04094312.1/9605-9526 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttaaggcacgcggtgaatgcca 78
||||||||||||||||||||||
Sbjct: 48 ttaaggcacgcggtgaatgcca 69
>RF00239;mir-124;BAAE01194669.1/2121-2201 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttaaggcacgcggtgaatgcca 78
||||||||||||||||||||||
Sbjct: 49 ttaaggcacgcggtgaatgcca 70
>RF00239;mir-124;BAAF04060426.1/3450-3529 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttaaggcacgcggtgaatgcca 78
||||||||||||||||||||||
Sbjct: 48 ttaaggcacgcggtgaatgcca 69
>RF00239;mir-124;AAVX01582238.1/229-149 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttaaggcacgcggtgaatgcca 78
||||||||||||||||||||||
Sbjct: 49 ttaaggcacgcggtgaatgcca 70
>RF00239;mir-124;ABEP02005892.1/41262-41341 7739:Branchiostoma
floridae (Florida lancelet)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ttaaggcacgcggtgaatgcca 78
||||||||||||||||||||||
Sbjct: 48 ttaaggcacgcggtgaatgcca 69
