miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00005;tRNA;AAWT01068559.1/21454-21372 :
Length = 83
Score = 165 bits (83), Expect = 1e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 6 tgggatgagcctcggtggtccggggtgcaggcttcaaacctgtagtcggttgacaccgaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgggatgagcctcggtggtccggggtgcaggcttcaaacctgtagtcggttgacaccgaa 60
Query: 66 gtggttcgattccacctttccag 88
|||||||||||||||||||||||
Sbjct: 61 gtggttcgattccacctttccag 83
>RF01852;tRNA-Sec;AAWT01038472.1/14950-14867 79327:Schmidtea
mediterranea
Length = 84
Score = 149 bits (75), Expect = 7e-36
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 8 ggatgagcctcggtggtccggggtgcaggcttcaaacctgtagtcggttgacaccgaagt 67
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6 ggatgagcctcggtggtccggggtgcaggcttcaaacctgtagttggttgacaccgaagt 65
Query: 68 ggttcgattccacctttcc 86
|||||||||||||||||||
Sbjct: 66 ggttcgattccacctttcc 84
>RF01852;tRNA-Sec;AAWT01061612.1/527-442 79327:Schmidtea
mediterranea
Length = 86
Score = 147 bits (74), Expect = 3e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 4 gctgggatgagcctcggtggtccggggtgcaggcttcaaacctgtagtcggttgacaccg 63
||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 1 gctgggatgagcctcggcggtgcggggtgcaggcttcaaacctgtagttggttgacaccg 60
Query: 64 aagtggttcgattccacctttccagc 89
||||||||||||||||||||||||||
Sbjct: 61 aagtggttcgattccacctttccagc 86
>RF00005;tRNA;AANH01003009.1/14491-14409 :
Length = 83
Score = 85.7 bits (43), Expect = 9e-17
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 8 ggatgagcctcggtggtccggggtgcaggcttcaaacctgtag 50
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ggatgagcctcggtggtccggggtgcaggcttcaaacctgtag 45
>RF00005;tRNA;ABEP02032885.1/41459-41377 :
Length = 83
Score = 77.8 bits (39), Expect = 2e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 8 ggatgagcctcggtggtccggggtgcaggcttcaaacctgtag 50
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3 ggatgaacctcggtggtccggggtgcaggcttcaaacctgtag 45
>RF01852;tRNA-Sec;CABF01018097.1/941-856 6182:Schistosoma
japonicum
Length = 86
Score = 71.9 bits (36), Expect = 1e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 8 ggatgagcctcggtggtccggggtgcaggcttcaaacctg 47
|||||| |||||||||||||||||||||||||||||||||
Sbjct: 5 ggatgaacctcggtggtccggggtgcaggcttcaaacctg 44
>RF00005;tRNA;ABKP02018690.1/6344-6262 :
Length = 83
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 17 tcggtggtccggggtgcaggcttcaaacctgtagtcggttgacaccgaagtggttcgatt 76
|||||||||||| |||||| ||||||| ||||||||| || | |||||||||||||||
Sbjct: 12 tcggtggtccggagtgcagacttcaaatctgtagtcgattagcgtcgaagtggttcgatt 71
Query: 77 ccacct 82
||||||
Sbjct: 72 ccacct 77
>RF01852;tRNA-Sec;AAAB01008807.1/3302840-3302925 180454:Anopheles
gambiae str. PEST
Length = 86
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 17 tcggtggtccggggtgcaggcttcaaacctgtagtcggttgacaccgaagtggttcgatt 76
|||||||||||| |||||| ||||||| ||||||||| || | |||||||||||||||
Sbjct: 14 tcggtggtccggagtgcagacttcaaatctgtagtcgattagcgtcgaagtggttcgatt 73
Query: 77 ccacct 82
||||||
Sbjct: 74 ccacct 79
>RF00005;tRNA;ABEG01009376.1/14684-14766 :
Length = 83
Score = 65.9 bits (33), Expect = 8e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 29 ggtgcaggcttcaaacctgtagtcggttgacaccgaagtggttcgattccacctttc 85
|||||||||||||||||||||| ||||| | ||| |||||||||| ||||||||||
Sbjct: 24 ggtgcaggcttcaaacctgtaggcggttagcgccgcagtggttcgactccacctttc 80
>RF01852;tRNA-Sec;ABEG01009376.1/14682-14767 135651:Caenorhabditis
brenneri
Length = 86
Score = 65.9 bits (33), Expect = 8e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 29 ggtgcaggcttcaaacctgtagtcggttgacaccgaagtggttcgattccacctttc 85
|||||||||||||||||||||| ||||| | ||| |||||||||| ||||||||||
Sbjct: 26 ggtgcaggcttcaaacctgtaggcggttagcgccgcagtggttcgactccacctttc 82
>RF01852;tRNA-Sec;ABKE01011694.1/1037-952 54126:Pristionchus
pacificus
Length = 86
Score = 63.9 bits (32), Expect = 3e-10
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 8 ggatgagcctcggtggtccggggtgcaggcttcaaacctgtagtcggttgacaccgaagt 67
|||||| | ||||||||||||||||| ||||||||||| |||| || || | || |||
Sbjct: 5 ggatgaacttcggtggtccggggtgcgggcttcaaacccgtaggcgcttagcggcgcagt 64
Query: 68 ggttcgattccacctt 83
||||||||||||||||
Sbjct: 65 ggttcgattccacctt 80
>RF01852;tRNA-Sec;AABS01000080.1/314113-314028 7719:Ciona
intestinalis
Length = 86
Score = 63.9 bits (32), Expect = 3e-10
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 8 ggatgagcctcggtggtccggggtgcaggcttcaaacctgtagtcggttgacaccgaagt 67
|||||| |||| |||||| |||||||||||||||||||||||| | || || | |||
Sbjct: 5 ggatgaacctcagtggtctggggtgcaggcttcaaacctgtagctgattaacgtcagagt 64
Query: 68 ggttcgattccacctt 83
||||||||||||||||
Sbjct: 65 ggttcgattccacctt 80
>RF01852;tRNA-Sec;AANI01014812.1/11394-11309 7244:Drosophila
virilis
Length = 86
Score = 63.9 bits (32), Expect = 3e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 11 tgagcctcggtggtccggggtgcaggcttcaaacctgtagtcggttgacaccgaagtggt 70
||||| ||||||||||||||||| | ||||||| | | ||||| || || |||||||||
Sbjct: 8 tgagcttcggtggtccggggtgcggacttcaaatccgcagtcgattaacgtcgaagtggt 67
Query: 71 tcgattccacct 82
||||||||||||
Sbjct: 68 tcgattccacct 79
>RF00005;tRNA;EF368037.1/399-485 :
Length = 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 8 ggatgagcctcggtggtccggggtgcaggcttcaaacctgtag 50
|||||| |||| |||||| ||||||||||||||||||||||||
Sbjct: 5 ggatgaccctcagtggtctggggtgcaggcttcaaacctgtag 47
>RF01852;tRNA-Sec;AAQA01000184.1/31070-31155 6279:Brugia malayi
Length = 86
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 16 ctcggtggtccggggtgcaggcttcaaacctgtag 50
|||||||||||||| ||||||||||||||||||||
Sbjct: 13 ctcggtggtccgggatgcaggcttcaaacctgtag 47
>RF01852;tRNA-Sec;K02939.1/210-295 8355:Xenopus laevis (African
clawed frog)
Length = 86
Score = 61.9 bits (31), Expect = 1e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 8 ggatgagcctcggtggtccggggtgcaggcttcaaacctgtag 50
|||||| |||| |||||| ||||||||||||||||||||||||
Sbjct: 5 ggatgaccctcagtggtctggggtgcaggcttcaaacctgtag 47
>RF01852;tRNA-Sec;BAAE01078547.1/1407-1492 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 61.9 bits (31), Expect = 1e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 8 ggatgagcctcggtggtccggggtgcaggcttcaaacctgtag 50
|||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 5 ggatgagcttcggtggtccggggtgcgggcttcaaacccgtag 47
>RF00005;tRNA;ABIR01001739.1/69737-69823 :
Length = 87
Score = 60.0 bits (30), Expect = 5e-09
Identities = 49/54 (90%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 30 gtgcaggcttcaaacctgtagtcggttgaca-ccgaagtggttcgattccacct 82
|||||| ||||||| |||||||||||| | | ||||||||||||||||||||||
Sbjct: 26 gtgcagacttcaaatctgtagtcggttaatagccgaagtggttcgattccacct 79
>RF01852;tRNA-Sec;ABIR01001739.1/69737-69822 6334:Trichinella
spiralis
Length = 86
Score = 60.0 bits (30), Expect = 5e-09
Identities = 49/54 (90%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 30 gtgcaggcttcaaacctgtagtcggttgaca-ccgaagtggttcgattccacct 82
|||||| ||||||| |||||||||||| | | ||||||||||||||||||||||
Sbjct: 26 gtgcagacttcaaatctgtagtcggttaatagccgaagtggttcgattccacct 79
>RF01852;tRNA-Sec;ABEP02022640.1/29517-29431 7739:Branchiostoma
floridae (Florida lancelet)
Length = 87
Score = 60.0 bits (30), Expect = 5e-09
Identities = 40/42 (95%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 10 atgagcctcggtggt-ccggggtgcaggcttcaaacctgtag 50
|||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 7 atgaccctcggtggtaccggggtgcaggcttcaaacctgtag 48
>RF01852;tRNA-Sec;AAZO01001342.1/5376-5461 121224:Pediculus
humanus corporis (human body louse)
Length = 86
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 15 cctcggtggtccggggtgcaggcttcaaacctgt 48
|||||||||||||||| |||||||||||||||||
Sbjct: 12 cctcggtggtccggggcgcaggcttcaaacctgt 45
>RF00005;tRNA;AACT01020551.1/1123-1041 :
Length = 83
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 15 cctcggtggtccggggtgcaggcttcaaacctgtagtcggttgacaccgaagtggttcga 74
|||| |||||| |||||||||||||||||||||||| | || || | ||||||||||
Sbjct: 10 cctcagtggtctggggtgcaggcttcaaacctgtagctgattaacgtcagagtggttcga 69
Query: 75 ttccacctt 83
|||||||||
Sbjct: 70 ttccacctt 78
>RF00005;tRNA;ABKE01001630.1/15141-15223 :
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 18 cggtggtccggggtgcaggcttcaaacctgtagtcggttgacaccgaagtggttcgattc 77
|||||||||||||||| ||||||||||| |||| || | | || |||||||||||||
Sbjct: 13 cggtggtccggggtgcgggcttcaaacccgtaggcgtctagcggcgcagtggttcgattc 72
Query: 78 cacctt 83
||||||
Sbjct: 73 cacctt 78
>RF00005;tRNA;AY572241.1/1-87 :
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 27 ggggtgcaggcttcaaacctgtagt 51
|||||||||||||||||||||||||
Sbjct: 24 ggggtgcaggcttcaaacctgtagt 48
>RF01852;tRNA-Sec;AY572241.1/1-86 3039:Euglena gracilis
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 27 ggggtgcaggcttcaaacctgtagt 51
|||||||||||||||||||||||||
Sbjct: 24 ggggtgcaggcttcaaacctgtagt 48
>RF00005;tRNA;ABGP01000229.1/75562-75480 :
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 27 ggggtgcaggcttcaaacctgtag 50
||||||||||||||||||||||||
Sbjct: 22 ggggtgcaggcttcaaacctgtag 45
>RF01852;tRNA-Sec;ABGP01000229.1/75564-75479 10228:Trichoplax
adhaerens
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 27 ggggtgcaggcttcaaacctgtag 50
||||||||||||||||||||||||
Sbjct: 24 ggggtgcaggcttcaaacctgtag 47
>RF00005;tRNA;CP001159.1/661483-661565 :
Length = 83
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 gggtgcaggcttcaaacctgtag 50
|||||||||||||||||||||||
Sbjct: 23 gggtgcaggcttcaaacctgtag 45
>RF00005;tRNA;ACCP01000273.1/128020-127934 :
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 gggtgcaggcttcaaacctgtag 50
|||||||||||||||||||||||
Sbjct: 25 gggtgcaggcttcaaacctgtag 47
>RF01852;tRNA-Sec;CP001330.1/218009-218094 296587:Micromonas sp.
RCC299
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 gggtgcaggcttcaaacctgtag 50
|||||||||||||||||||||||
Sbjct: 25 gggtgcaggcttcaaacctgtag 47
>RF01852;tRNA-Sec;ACCP01000273.1/128020-127935 564608:Micromonas
pusilla CCMP1545
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 gggtgcaggcttcaaacctgtag 50
|||||||||||||||||||||||
Sbjct: 25 gggtgcaggcttcaaacctgtag 47
>RF01852;tRNA-Sec;ABRM01001664.1/22676-22591 6085:Hydra
magnipapillata
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 17 tcggtggtccggggtgcaggcttcaaacctgtag 50
|||||||||||| |||| ||||||||||| ||||
Sbjct: 14 tcggtggtccggagtgcgggcttcaaacccgtag 47
