miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana (thale
           cress)
          Length = 98

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 88  tgtcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||||
Sbjct: 71  tgtcggaccaggcttcattcccctca 96




>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana (thale
           cress)
          Length = 101

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 88  tgtcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||||
Sbjct: 74  tgtcggaccaggcttcattcccctca 99




>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
           pekinensis
          Length = 122

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 89  gtcggaccaggcttcattcccctca 113
           |||||||||||||||||||||||||
Sbjct: 96  gtcggaccaggcttcattcccctca 120




>RF00075;mir-166;AC189591.2/50508-50400 51351:Brassica rapa subsp.
           pekinensis
          Length = 109

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 89  gtcggaccaggcttcattcccctca 113
           |||||||||||||||||||||||||
Sbjct: 83  gtcggaccaggcttcattcccctca 107




>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
           (thale cress)
          Length = 145

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 89  gtcggaccaggcttcattcccctca 113
           |||||||||||||||||||||||||
Sbjct: 119 gtcggaccaggcttcattcccctca 143




>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
           (papaya)
          Length = 125

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 100 tcggaccaggcttcattcccctca 123




>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
           (papaya)
          Length = 100

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 75  tcggaccaggcttcattcccctca 98




>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana (thale
           cress)
          Length = 100

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 75  tcggaccaggcttcattcccctca 98




>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus trichocarpa
          Length = 88

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 63  tcggaccaggcttcattcccctca 86




>RF00075;mir-166;AARH01009662.1/134102-134198 3694:Populus
           trichocarpa
          Length = 97

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 72  tcggaccaggcttcattcccctca 95




>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
          Length = 96

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 71  tcggaccaggcttcattcccctca 94




>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
          Length = 94

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 69  tcggaccaggcttcattcccctca 92




>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
           (barrel medic)
          Length = 106

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 81  tcggaccaggcttcattcccctca 104




>RF00075;mir-166;CU302248.6/62232-62044 3880:Medicago truncatula
           (barrel medic)
          Length = 189

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 164 tcggaccaggcttcattcccctca 187




>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
          Length = 123

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 98  tcggaccaggcttcattcccctca 121




>RF00075;mir-166;BABK01039514.1/607-703 34305:Lotus japonicus
          Length = 97

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 72  tcggaccaggcttcattcccctca 95




>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
          Length = 90

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 65  tcggaccaggcttcattcccctca 88




>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
          Length = 157

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 132 tcggaccaggcttcattcccctca 155




>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
          Length = 150

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 125 tcggaccaggcttcattcccctca 148




>RF00075;mir-166;AM485267.2/15969-16057 29760:Vitis vinifera
          Length = 89

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 86  ggtgtcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||| ||||
Sbjct: 60  ggtgtcggaccaggcttcattcctctca 87




>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
          Length = 90

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 65  tcggaccaggcttcattcccctca 88




>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
          Length = 119

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 94  tcggaccaggcttcattcccctca 117




>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
          Length = 114

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 89  tcggaccaggcttcattcccctca 112




>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
          Length = 97

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 72  tcggaccaggcttcattcccctca 95




>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
          Length = 122

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 99  tcggaccaggcttcattcccctca 122




>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
           (sorghum)
          Length = 118

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 93  tcggaccaggcttcattcccctca 116




>RF00075;mir-166;ABXC01000331.1/255164-255261 4558:Sorghum bicolor
           (sorghum)
          Length = 98

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 73  tcggaccaggcttcattcccctca 96




>RF00075;mir-166;ABXC01000758.1/126828-126715 4558:Sorghum bicolor
           (sorghum)
          Length = 114

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 89  tcggaccaggcttcattcccctca 112




>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
           (sorghum)
          Length = 97

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 72  tcggaccaggcttcattcccctca 95




>RF00075;mir-166;AC027660.2/136704-136618 39947:Oryza sativa
           Japonica Group
          Length = 87

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 62  tcggaccaggcttcattcccctca 85




>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
           Indica Group
          Length = 87

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 62  tcggaccaggcttcattcccctca 85




>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
           Indica Group
          Length = 121

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 96  tcggaccaggcttcattcccctca 119




>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
           Japonica Group
          Length = 103

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 78  tcggaccaggcttcattcccctca 101




>RF00075;mir-166;ABEU01002487.1/1609-1703 145481:Physcomitrella
           patens subsp. patens
          Length = 95

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 70  tcggaccaggcttcattcccctca 93




>RF00075;mir-166;ABEU01002053.1/8010-8104 145481:Physcomitrella
           patens subsp. patens
          Length = 95

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 70  tcggaccaggcttcattcccctca 93




>RF00075;mir-166;ABEU01003209.1/178750-178656 145481:Physcomitrella
           patens subsp. patens
          Length = 95

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 70  tcggaccaggcttcattcccctca 93




>RF00075;mir-166;ABEU01002839.1/114707-114612 145481:Physcomitrella
           patens subsp. patens
          Length = 96

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 71  tcggaccaggcttcattcccctca 94




>RF00075;mir-166;ABEU01001509.1/37358-37431 145481:Physcomitrella
           patens subsp. patens
          Length = 74

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  tcggaccaggcttcattcccctca 113
           ||||||||||||||||||||||||
Sbjct: 49  tcggaccaggcttcattcccctca 72




>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
           trichocarpa
          Length = 134

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 88  tgtcggaccaggcttcattcccc 110
           |||||||||||||||||||||||
Sbjct: 107 tgtcggaccaggcttcattcccc 129




>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
           trichocarpa
          Length = 155

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 88  tgtcggaccaggcttcattcccc 110
           |||||||||||||||||||||||
Sbjct: 128 tgtcggaccaggcttcattcccc 150




>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
          Length = 113

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 88  tgtcggaccaggcttcattcccc 110
           |||||||||||||||||||||||
Sbjct: 86  tgtcggaccaggcttcattcccc 108




>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
          Length = 148

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 88  tgtcggaccaggcttcattcccc 110
           |||||||||||||||||||||||
Sbjct: 121 tgtcggaccaggcttcattcccc 143




>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
           tobacco)
          Length = 185

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 88  tgtcggaccaggcttcattcccc 110
           |||||||||||||||||||||||
Sbjct: 160 tgtcggaccaggcttcattcccc 182




>RF00075;mir-166;ABXC01000715.1/152379-152276 4558:Sorghum bicolor
           (sorghum)
          Length = 104

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 84  atggtgtcggaccaggcttcattcccc 110
           ||||| |||||||||||||||||||||
Sbjct: 73  atggtttcggaccaggcttcattcccc 99




>RF00075;mir-166;ABEU01001509.1/36651-36730 145481:Physcomitrella
           patens subsp. patens
          Length = 80

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 90  tcggaccaggcttcattcccctc 112
           |||||||||||||||||||||||
Sbjct: 55  tcggaccaggcttcattcccctc 77




>RF00075;mir-166;ABEU01001509.1/36829-36913 145481:Physcomitrella
           patens subsp. patens
          Length = 85

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 90  tcggaccaggcttcattcccctc 112
           |||||||||||||||||||||||
Sbjct: 60  tcggaccaggcttcattcccctc 82




>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
           (papaya)
          Length = 136

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 89  gtcggaccaggcttcattcccc 110
           ||||||||||||||||||||||
Sbjct: 110 gtcggaccaggcttcattcccc 131




>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
           cress)
          Length = 122

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 89  gtcggaccaggcttcattcccc 110
           ||||||||||||||||||||||
Sbjct: 96  gtcggaccaggcttcattcccc 117




>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus trichocarpa
          Length = 125

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 89  gtcggaccaggcttcattcccc 110
           ||||||||||||||||||||||
Sbjct: 99  gtcggaccaggcttcattcccc 120




>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
           (castor bean)
          Length = 121

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 89  gtcggaccaggcttcattcccc 110
           ||||||||||||||||||||||
Sbjct: 95  gtcggaccaggcttcattcccc 116




>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
           (castor bean)
          Length = 133

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 89  gtcggaccaggcttcattcccc 110
           ||||||||||||||||||||||
Sbjct: 107 gtcggaccaggcttcattcccc 128




>RF00075;mir-166;AASG02003407.1/927-777 3988:Ricinus communis
           (castor bean)
          Length = 151

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 90  tcggaccaggcttcattcccct 111
           ||||||||||||||||||||||
Sbjct: 126 tcggaccaggcttcattcccct 147




>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
          Length = 156

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 89  gtcggaccaggcttcattcccc 110
           ||||||||||||||||||||||
Sbjct: 130 gtcggaccaggcttcattcccc 151




>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
          Length = 150

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 89  gtcggaccaggcttcattcccc 110
           ||||||||||||||||||||||
Sbjct: 124 gtcggaccaggcttcattcccc 145




>RF00075;mir-166;ABEU01015165.1/9230-9152 145481:Physcomitrella
           patens subsp. patens
          Length = 79

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 90  tcggaccaggcttcattcccct 111
           ||||||||||||||||||||||
Sbjct: 54  tcggaccaggcttcattcccct 75




>RF00075;mir-166;ABEU01008046.1/36531-36607 145481:Physcomitrella
           patens subsp. patens
          Length = 77

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 90  tcggaccaggcttcattcccct 111
           ||||||||||||||||||||||
Sbjct: 52  tcggaccaggcttcattcccct 73




>RF00075;mir-166;ABEU01008046.1/36699-36780 145481:Physcomitrella
           patens subsp. patens
          Length = 82

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  cggaccaggcttcattcccctc 112
           ||||||||||||||||||||||
Sbjct: 58  cggaccaggcttcattcccctc 79




>RF00075;mir-166;ABEU01005077.1/22634-22717 145481:Physcomitrella
           patens subsp. patens
          Length = 84

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  cggaccaggcttcattcccctc 112
           ||||||||||||||||||||||
Sbjct: 60  cggaccaggcttcattcccctc 81