miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABEU01012145.1/27473-27654 145481:Physcomitrella
patens subsp. patens
Length = 182
Score = 337 bits (170), Expect = 3e-92
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 1 cagcgtggagctttcttcggtccaatagtggctgagtcgaaggttgtgctgctgccgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cagcgtggagctttcttcggtccaatagtggctgagtcgaaggttgtgctgctgccgact 65
Query: 61 caaacttccggcttccctatccaacccctggtatggaatccgaatgtctgatacgggagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 caaacttccggcttccctatccaacccctggtatggaatccgaatgtctgatacgggagc 125
Query: 121 tgttcaatctccggcttagcatctcttggactgaagggagctccccgctg 170
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tgttcaatctccggcttagcatctcttggactgaagggagctccccgctg 175
>RF00638;MIR159;ABEU01011353.1/55901-55718 145481:Physcomitrella
patens subsp. patens
Length = 184
Score = 139 bits (70), Expect = 1e-32
Identities = 116/130 (89%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 36 gtcgaaggttgtgctgctgccgactcaaacttccggcttccctatc-caacccctggtat 94
|||||||||||| | |||||||||||||||||||||||||| |||| | || | || |||
Sbjct: 42 gtcgaaggttgtaccgctgccgactcaaacttccggcttccatatcacgacgcgtgatat 101
Query: 95 ggaatccgaatgtctgatacgggagctgttcaatctccggcttagcatctcttggactga 154
|||||||||| ||||||| ||||||||| || |||||| | |||||||||||||||||||
Sbjct: 102 ggaatccgaaggtctgatccgggagctgatcgatctccaggttagcatctcttggactga 161
Query: 155 agggagctcc 164
||||||||||
Sbjct: 162 agggagctcc 171
>RF00638;MIR159;ABEU01002787.1/15883-15704 145481:Physcomitrella
patens subsp. patens
Length = 180
Score = 85.7 bits (43), Expect = 2e-16
Identities = 132/159 (83%), Gaps = 2/159 (1%)
Strand = Plus / Plus
Query: 7 ggagctttcttcggtccaatagtggctgagtcgaaggttgtgctgctgccgactcaaact 66
||||||| ||||||| ||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 12 ggagcttccttcggttcaatagtggctgatatga-ggttgcactgctgccgactcaaact 70
Query: 67 tccggcttccctatccaacccctggtatggaatccgaatgtctgatacgggagctgttca 126
|||||||||||| || | ||| | |||||||||||||||||| ||||||||| |
Sbjct: 71 tccggcttccctctctta-gaatggcagggaatccgaatgtctgatgcgggagctgagcg 129
Query: 127 atctccggcttagcatctcttggactgaagggagctccc 165
||| | || ||| ||||||||||||||||||||||||
Sbjct: 130 gtcttcaactcagcttctcttggactgaagggagctccc 168
>RF00638;MIR159;ABEU01006795.1/68509-68689 145481:Physcomitrella
patens subsp. patens
Length = 181
Score = 60.0 bits (30), Expect = 1e-08
Identities = 98/118 (83%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 49 ctgctgccgactcaaacttccggcttccctatccaacccctggtatggaatccgaatgtc 108
|||||||||| ||||||||||||||||||| || | | | | | ||||||||||||||
Sbjct: 53 ctgctgccgattcaaacttccggcttccctttcttaacac-gacagggaatccgaatgtc 111
Query: 109 tgatacgggagctgttcaatctccggc-ttagcatctcttggactgaagggagctccc 165
|||| |||||||||| | ||| | | ||||| |||||||||||||||||||||||
Sbjct: 112 tgatgcgggagctgtgcggtcttcaactttagcgcctcttggactgaagggagctccc 169
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 144 tcttggactgaagggagctccc 165
||||||||||||||||||||||
Sbjct: 198 tcttggactgaagggagctccc 219
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 144 tcttggactgaagggagctccc 165
||||||||||||||||||||||
Sbjct: 158 tcttggactgaagggagctccc 179
>RF00638;MIR159;EU526570.1/508-238 49390:Coffea canephora
Length = 271
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccccg 167
||||||||||||||||||||||
Sbjct: 240 ttggactgaagggagctccccg 261
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 144 tcttggactgaagggagctccc 165
||||||||||||||||||||||
Sbjct: 162 tcttggactgaagggagctccc 183
