miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABEU01006795.1/68509-68689 145481:Physcomitrella
patens subsp. patens
Length = 181
Score = 345 bits (174), Expect = 1e-94
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 1 ctagccgtgggagctccttccggttcaatagtggctgatgtgaggttgcactgctgccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ctagccgtgggagctccttccggttcaatagtggctgatgtgaggttgcactgctgccga 62
Query: 61 ttcaaacttccggcttccctttcttaacacgacagggaatccgaatgtctgatgcgggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ttcaaacttccggcttccctttcttaacacgacagggaatccgaatgtctgatgcgggag 122
Query: 121 ctgtgcggtcttcaactttagcgcctcttggactgaagggagctcccaagtctt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ctgtgcggtcttcaactttagcgcctcttggactgaagggagctcccaagtctt 176
>RF00638;MIR159;ABEU01002787.1/15883-15704 145481:Physcomitrella
patens subsp. patens
Length = 180
Score = 198 bits (100), Expect = 2e-50
Identities = 152/168 (90%), Gaps = 1/168 (0%)
Strand = Plus / Plus
Query: 7 gtgggagctccttccggttcaatagtggctgatgtgaggttgcactgctgccgattcaaa 66
||||||||| | | ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 9 gtgggagcttccttcggttcaatagtggctgatatgaggttgcactgctgccgactcaaa 68
Query: 67 cttccggcttccctttcttaacacgacagggaatccgaatgtctgatgcgggagctgtgc 126
|||||||||||||| ||||| | | ||||||||||||||||||||||||||||||| ||
Sbjct: 69 cttccggcttccctctcttagaatggcagggaatccgaatgtctgatgcgggagctgagc 128
Query: 127 ggtcttcaactttagcgcctcttggactgaagggagctcccaagtctt 174
|||||||||| | ||| |||||||||||||||||||||||| |||||
Sbjct: 129 ggtcttcaac-tcagcttctcttggactgaagggagctcccatgtctt 175
>RF00638;MIR159;ABEU01012145.1/27473-27654 145481:Physcomitrella
patens subsp. patens
Length = 182
Score = 60.0 bits (30), Expect = 1e-08
Identities = 98/118 (83%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 51 ctgctgccgattcaaacttccggcttccctttcttaacac-gacagggaatccgaatgtc 109
|||||||||| ||||||||||||||||||| || | | | | | ||||||||||||||
Sbjct: 54 ctgctgccgactcaaacttccggcttccctatccaacccctggtatggaatccgaatgtc 113
Query: 110 tgatgcgggagctgtgcggtcttcaactttagcgcctcttggactgaagggagctccc 167
|||| |||||||||| | ||| | | ||||| |||||||||||||||||||||||
Sbjct: 114 tgatacgggagctgttcaatctccggc-ttagcatctcttggactgaagggagctccc 170
>RF00638;MIR159;ABEU01011353.1/55901-55718 145481:Physcomitrella
patens subsp. patens
Length = 184
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 43 aggttgcactgctgccgattcaaacttccggcttcc 78
|||||| || |||||||| |||||||||||||||||
Sbjct: 47 aggttgtaccgctgccgactcaaacttccggcttcc 82
Score = 46.1 bits (23), Expect = 2e-04
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 96 ggaatccgaatgtctgatgcgggagctgtgcggtcttcaactttagcgcctcttggactg 155
|||||||||| ||||||| ||||||||| || ||| || || ||| |||||||||||
Sbjct: 102 ggaatccgaaggtctgatccgggagctgatcgatctccaggtt-agcatctcttggactg 160
Query: 156 aagggagctcc 166
|||||||||||
Sbjct: 161 aagggagctcc 171
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 146 tcttggactgaagggagctccc 167
||||||||||||||||||||||
Sbjct: 198 tcttggactgaagggagctccc 219
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 146 tcttggactgaagggagctccc 167
||||||||||||||||||||||
Sbjct: 158 tcttggactgaagggagctccc 179
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 146 tcttggactgaagggagctccc 167
||||||||||||||||||||||
Sbjct: 162 tcttggactgaagggagctccc 183
