miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 90 ctcatgcactgcctcttccctggctt 115
||||||||||||||||||||||||||
Sbjct: 81 ctcatgcactgcctcttccctggctt 106
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 90 ctcatgcactgcctcttccctggct 114
|||||||||||||||||||||||||
Sbjct: 115 ctcatgcactgcctcttccctggct 139
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 92 catgcactgcctcttccctggctt 115
||||||||||||||||||||||||
Sbjct: 79 catgcactgcctcttccctggctt 102
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 94 tgcactgcctcttccctggcttcc 117
||||||||||||||||||||||||
Sbjct: 82 tgcactgcctcttccctggcttcc 105
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 ctcatgcactgcctcttccctggc 113
||||||||||||||||||||||||
Sbjct: 95 ctcatgcactgcctcttccctggc 118
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 catgcactgcctcttccctggct 114
|||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggct 108
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 catgcactgcctcttccctggct 114
|||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggct 108
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 tgcactgcctcttccctggcttccct 119
||||||||||||||||||||| ||||
Sbjct: 143 tgcactgcctcttccctggctcccct 168
