miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00778;MIR473;ABEU01009332.1/18900-19015 145481:Physcomitrella
patens subsp. patens
Length = 116
Score = 230 bits (116), Expect = 4e-60
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 20 attgcttgttcctctccctcaaaggcttccaacaacaggtacttggtcttgttttcacca 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attgcttgttcctctccctcaaaggcttccaacaacaggtacttggtcttgttttcacca 60
Query: 80 gcaaagctaaggcccgtcccagatgttagaagcctctgggggtgacgaagcagcag 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcaaagctaaggcccgtcccagatgttagaagcctctgggggtgacgaagcagcag 116
>RF00778;MIR473;ABEU01011565.1/20254-20339 145481:Physcomitrella
patens subsp. patens
Length = 86
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 21 ttgcttgttcctctccctcaaaggcttccaaca 53
|||||| ||||||||||||||||||||||||||
Sbjct: 2 ttgctttttcctctccctcaaaggcttccaaca 34
>RF00780;MIR477;ABEU01011353.1/22038-21912 145481:Physcomitrella
patens subsp. patens
Length = 127
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 32 tctccctcaaaggcttccaacaacagg 58
|||||||||||||||||||||||||||
Sbjct: 12 tctccctcaaaggcttccaacaacagg 38
>RF00780;MIR477;ABEU01012303.1/7387-7514 145481:Physcomitrella
patens subsp. patens
Length = 128
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 32 tctccctcaaaggcttccaacaacag 57
||||||||||||||||||||||||||
Sbjct: 12 tctccctcaaaggcttccaacaacag 37
>RF00778;MIR473;ABEU01001451.1/57637-57555 145481:Physcomitrella
patens subsp. patens
Length = 83
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 31 ctctccctcaaaggcttccaacaacaggt 59
||||||||||||||||||||||| |||||
Sbjct: 12 ctctccctcaaaggcttccaacatcaggt 40
>RF00780;MIR477;AASG02000511.1/21598-21512 3988:Ricinus communis
(castor bean)
Length = 87
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tctccctcaaaggcttccaaca 53
||||||||||||||||||||||
Sbjct: 12 tctccctcaaaggcttccaaca 33
