miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00780;MIR477;ABEU01012303.1/7387-7514 145481:Physcomitrella
patens subsp. patens
Length = 128
Score = 254 bits (128), Expect = 2e-67
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 1 gtgttcgtttttctccctcaaaggcttccaacaacagtcggaattaactctgatgcggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgttcgtttttctccctcaaaggcttccaacaacagtcggaattaactctgatgcggcc 60
Query: 61 attatcactggttgcagtgaattattctagttctgctgttggaagccttcgtgggagacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attatcactggttgcagtgaattattctagttctgctgttggaagccttcgtgggagacg 120
Query: 121 aaagaacc 128
||||||||
Sbjct: 121 aaagaacc 128
>RF00780;MIR477;ABEU01011353.1/22038-21912 145481:Physcomitrella
patens subsp. patens
Length = 127
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gtgttcgtttttctccctcaaaggcttccaacaacag 37
||||| |||||||||||||||||||||||||||||||
Sbjct: 1 gtgtttgtttttctccctcaaaggcttccaacaacag 37
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 92 tctgctgttggaagccttcgtgggagacgaaagaa 126
|||||||| ||||||||||| |||||| |||||||
Sbjct: 91 tctgctgtcggaagccttcgagggagatgaaagaa 125
>RF00778;MIR473;ABEU01009332.1/18900-19015 145481:Physcomitrella
patens subsp. patens
Length = 116
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 tctccctcaaaggcttccaacaacag 37
||||||||||||||||||||||||||
Sbjct: 13 tctccctcaaaggcttccaacaacag 38
>RF00780;MIR477;AASG02000511.1/21598-21512 3988:Ricinus communis
(castor bean)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tctccctcaaaggcttccaaca 33
||||||||||||||||||||||
Sbjct: 12 tctccctcaaaggcttccaaca 33
>RF00778;MIR473;ABEU01011565.1/20254-20339 145481:Physcomitrella
patens subsp. patens
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tctccctcaaaggcttccaaca 33
||||||||||||||||||||||
Sbjct: 13 tctccctcaaaggcttccaaca 34
>RF00778;MIR473;ABEU01001451.1/57637-57555 145481:Physcomitrella
patens subsp. patens
Length = 83
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tctccctcaaaggcttccaaca 33
||||||||||||||||||||||
Sbjct: 13 tctccctcaaaggcttccaaca 34
