miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01014391.1/4590-4745 39947:Oryza sativa
Japonica Group
Length = 156
Score = 230 bits (116), Expect = 4e-60
Identities = 124/128 (96%)
Strand = Plus / Minus
Query: 1 ccataaaaaaccaacctggtattggaggtgatattccctagtataacgaatntaggcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 139 ccataaaaaaccaacctggtattggaggtgatattccctagtataacgaatctaggcaac 80
Query: 61 cttntgttcagattcgttgtattaggaaatatcncctccaatagtaggttgattttttgt 120
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 79 cttctgttcagattcgttgtattaggaaatatcacctccaatagtaggttgattttttgt 20
Query: 121 gggncgaa 128
||| ||||
Sbjct: 19 gggacgaa 12
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 5 aaaaaaccaacctggtattggaggtgatattccctagtataacgaat 51
|||||| |||||| |||||||||||||||| |||| || |||||||
Sbjct: 22 aaaaaatcaacctactattggaggtgatatttcctaatacaacgaat 68
>RF00906;MIR1122;AL713943.3/124714-124851 4530:Oryza sativa (rice)
Length = 138
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 65 tgttcagattcgttgtattagga 87
|||||||||||||||||||||||
Sbjct: 76 tgttcagattcgttgtattagga 54
>RF00906;MIR1122;AP008218.1/21039366-21039229 39947:Oryza sativa
Japonica Group
Length = 138
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 tgttcagattcgttgtattagga 87
|||||||||||||||||||||||
Sbjct: 63 tgttcagattcgttgtattagga 85
