miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02013022.1/7455-7611 39946:Oryza sativa Indica
Group
Length = 157
Score = 50.1 bits (25), Expect = 9e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 106 catctagtactagtttagttttttataggacgaagagagta 146
||||||||||||| || ||||||||| |||||||| |||||
Sbjct: 113 catctagtactaggttggttttttatgggacgaagggagta 153
>RF00906;MIR1122;AC136448.2/118247-118097 39947:Oryza sativa
Japonica Group
Length = 151
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 54 tgatacatcctaatacaatgaaactggacat 84
|||||||||||||||||| ||| ||||||||
Sbjct: 46 tgatacatcctaatacaacgaatctggacat 76
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 54 tgatacatcctaatacaatgaaactggaca 83
|||||||||||||||||| ||| |||||||
Sbjct: 106 tgatacatcctaatacaacgaatctggaca 77
>RF00906;MIR1122;AAAA02018504.1/8341-8217 39946:Oryza sativa
Indica Group
Length = 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 53 atgatacatcctaatacaatgaaactggac 82
|||| |||||||||||||||||| ||||||
Sbjct: 81 atgacacatcctaatacaatgaatctggac 52
>RF00906;MIR1122;AP008214.1/666276-666163 39947:Oryza sativa
Japonica Group
Length = 114
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 123 gttttttataggacgaagagagtaca 148
||||||||| ||||||||||||||||
Sbjct: 87 gttttttatgggacgaagagagtaca 112
>RF00906;MIR1122;AP004566.3/93541-93654 39947:Oryza sativa Japonica
Group
Length = 114
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 123 gttttttataggacgaagagagtaca 148
||||||||| ||||||||||||||||
Sbjct: 28 gttttttatgggacgaagagagtaca 3
