miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF02000;MIR1846;AC087412.14/69387-69471 39947:Oryza sativa
Japonica Group
Length = 85
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 ccggatctcctagtgaggaggccgggaccgccggatccggtgaccccggtctcctcgccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ccggatctcctagtgaggaggccgggaccgccggatccggtgaccccggtctcctcgccg 68
Query: 61 gcggatccg 69
|||||||||
Sbjct: 69 gcggatccg 77
>RF02000;MIR1846;AACV01005065.1/8234-8319 39947:Oryza sativa
Japonica Group
Length = 86
Score = 113 bits (57), Expect = 3e-25
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 1 ccggatctcctagtgaggaggccgggaccgccggatccggtgaccccggtctcctcgccg 60
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 9 ccggatctcccagtgaggaggccggggccgccggatccggtgaccccggtctcctcgccg 68
Query: 61 gcggatccg 69
| |||||||
Sbjct: 69 gtggatccg 77
>RF02000;MIR1846;AACV01002897.1/82779-82864 39947:Oryza sativa
Japonica Group
Length = 86
Score = 81.8 bits (41), Expect = 1e-15
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 1 ccggatctcctagtgaggaggccgggaccgccggatccggtgaccccggtctcctcgccg 60
|||||||||| |||||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 9 ccggatctcccagtgagtaggcccgggccgccagatccggtgaccccggtctcctcgccg 68
Query: 61 g 61
|
Sbjct: 69 g 69
>RF02000;MIR1846;AK101387.1/107-181 39947:Oryza sativa Japonica
Group
Length = 75
Score = 77.8 bits (39), Expect = 2e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 15 gaggaggccgggaccgccggatccggtgaccccggtctcctcgccggcgga 65
|||||||||||||||| |||||||||||||||||| ||||||| |||||||
Sbjct: 18 gaggaggccgggaccgtcggatccggtgaccccggcctcctcgtcggcgga 68
>RF02000;MIR1846;AAAA02031067.1/51056-50970 39946:Oryza sativa
Indica Group
Length = 87
Score = 71.9 bits (36), Expect = 9e-13
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 ccggatctcctagtgaggaggccgggaccgccggatccggtgaccccggtctcctcgccg 60
|||||||||| | ||||||||| ||| || ||||||||| ||||||| |||||||||||
Sbjct: 9 ccggatctcccaatgaggaggctggggccaccggatccgatgaccccattctcctcgccg 68
Query: 61 gcggatcc 68
||||||||
Sbjct: 69 gcggatcc 76
>RF02000;MIR1846;AACV01002364.1/1355-1286 39947:Oryza sativa
Japonica Group
Length = 70
Score = 69.9 bits (35), Expect = 4e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 15 gaggaggccgggaccgccggatccggtgaccccggtctcctcgccggcggatccg 69
|||||||||||||| | ||||||||||||| |||| |||||||||||| ||||||
Sbjct: 15 gaggaggccgggactgtcggatccggtgactccggcctcctcgccggcagatccg 69
>RF02000;MIR1846;AP005393.3/71056-70970 39947:Oryza sativa
Japonica Group
Length = 87
Score = 61.9 bits (31), Expect = 9e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 15 gaggaggccgggaccgccggatccggtgaccccgg 49
|||||||||||||||| ||||||||||||||||||
Sbjct: 23 gaggaggccgggaccgtcggatccggtgaccccgg 57
>RF02000;MIR1846;AP008213.1/19406916-19406831 39947:Oryza sativa
Japonica Group
Length = 86
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 15 gaggaggccgggaccgccggatccggtgac 44
||||||||||||||||||||||||||||||
Sbjct: 23 gaggaggccgggaccgccggatccggtgac 52
>RF02000;MIR1846;AP008209.1/2437922-2438008 39947:Oryza sativa
Japonica Group
Length = 87
Score = 60.0 bits (30), Expect = 4e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 4 gatctcctagtgaggaggccgggaccgccggatccggtgaccccggtctcctcgccggcg 63
||||||| ||||||||| | || |||||||||||||||| ||| |||||| |||||||
Sbjct: 12 gatctcccagtgaggagactagggccgccggatccggtgatcccattctccttgccggcg 71
Query: 64 gatccg 69
||||||
Sbjct: 72 gatccg 77
>RF02000;MIR1846;AAAA02031642.1/3210-3295 39946:Oryza sativa
Indica Group
Length = 86
Score = 48.1 bits (24), Expect = 1e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 16 aggaggccgggaccgccggatccggtgaccccggtctcctcgccggcggatc 67
|||||||| || || || |||||||||||||||| ||||||| || ||||||
Sbjct: 24 aggaggcccgggccaccagatccggtgaccccggcctcctcgtcgacggatc 75
>RF02000;MIR1846;AAAA02009653.1/5354-5268 39946:Oryza sativa
Indica Group
Length = 87
Score = 46.1 bits (23), Expect = 5e-05
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 15 gaggaggccgggaccgccggatccggtgaccccggtctcctcgccggcggatccg 69
||||||||| ||||||||| | |||||| |||| |||||||||||| ||||||
Sbjct: 23 gaggaggcctggaccgccgtaattggtgactccggcctcctcgccggcagatccg 77
