miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01043;MIR1023;ABEU01008017.1/44531-44383 145481:Physcomitrella
patens subsp. patens
Length = 149
Score = 280 bits (141), Expect = 5e-75
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 1 tgtagaagatgcagcttgcagattatcatccactctctccgtttcccttcccacagctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tgtagaagatgcagcttgcagattatcatccactctctccgtttcccttcccacagctat 64
Query: 61 catccggactagcatttcctgtacatactagggaagggaaatggagagagtgtataatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 catccggactagcatttcctgtacatactagggaagggaaatggagagagtgtataatga 124
Query: 121 attgcatgcttgattgctgag 141
|||||||||||||||||||||
Sbjct: 125 attgcatgcttgattgctgag 145
>RF01043;MIR1023;ABEU01004286.1/181902-181728
145481:Physcomitrella patens subsp. patens
Length = 175
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 29 tccactctctccgtttcccttccca 53
|||||||||||||||||||||||||
Sbjct: 32 tccactctctccgtttcccttccca 56
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 107 agagtgtataatgaattgcatgcttgattg 136
|||||||| ||||||||||| |||||||||
Sbjct: 137 agagtgtacaatgaattgcaagcttgattg 166
>RF01043;MIR1023;ABEU01004286.1/191785-191642 145481:Physcomitrella
patens subsp. patens
Length = 144
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 25 atcatccactctctccgtttcccttcc 51
||||| |||||||||||||||||||||
Sbjct: 116 atcatacactctctccgtttcccttcc 90
