miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 149 bits (75), Expect = 1e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtnagcacacggcgcggcggctagccatcggggngatgcctgccccn 81
||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacacggcgcggcggctagccatcggcgggatgcctgccccc 60
Query: 82 gccgcgtgctcgctcctctttctgtcag 109
||||||||||||||||||||||||||||
Sbjct: 61 gccgcgtgctcgctcctctttctgtcag 88
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 52.0 bits (26), Expect = 2e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtnagcacacggcgcg 50
||||||||||||||| |||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacacggcgcg 29
>RF00073;mir-156;ABXC01006854.1/140253-140338 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 50.1 bits (25), Expect = 7e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 78 cccngccgcgtgctcgctcctctttctgtcag 109
||| |||||||||||||| |||||||||||||
Sbjct: 55 ccccgccgcgtgctcgcttctctttctgtcag 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtnagcacacggcgcggcggc 55
|||||||||||||| ||||| ||||||||||||
Sbjct: 1 ttgacagaagagagcgagcacccggcgcggcggc 34
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 48.1 bits (24), Expect = 3e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtnagcacacggcg 48
||||||||||||||| |||||||||||
Sbjct: 1 ttgacagaagagagtgagcacacggcg 27
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 gccgcgtgctcgctcctctttctgtca 108
||||||||||| |||||||||||||||
Sbjct: 59 gccgcgtgctcactcctctttctgtca 85
>RF00073;mir-156;ABXC01004344.1/59682-59592 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 44.1 bits (22), Expect = 5e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacggc 47
|||||||||||||| ||||||||||
Sbjct: 2 tgacagaagagagtgagcacacggc 26
>RF00073;mir-156;ABXC01002848.1/26684-26598 4558:Sorghum bicolor
(sorghum)
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacggc 47
|||||||||||||| ||||||||||
Sbjct: 2 tgacagaagagagtgagcacacggc 26
>RF00073;mir-156;AAAA02006911.1/103-14 39946:Oryza sativa Indica
Group
Length = 90
Score = 44.1 bits (22), Expect = 5e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacggc 47
|||||||||||||| ||||||||||
Sbjct: 2 tgacagaagagagtgagcacacggc 26
>RF00073;mir-156;AP005286.3/98217-98130 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacggc 47
|||||||||||||| ||||||||||
Sbjct: 2 tgacagaagagagtgagcacacggc 26
