miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02006222.1/38105-37993 39946:Oryza sativa
Indica Group
Length = 113
Score = 192 bits (97), Expect = 8e-49
Identities = 109/113 (96%)
Strand = Plus / Plus
Query: 8 tactaactccctccgtctcaaaataaatcaacttctagctacgaacctggatataggtta 67
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacttactccctccgtcccaaaataaatcaacttctagctacgaacctggatataggtta 60
Query: 68 tgtccaggtttgtagccagaagttgatttattgtgaggcagagggagtagcta 120
||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 61 tgtccagatttgtagccagaagttgatttattgtgaggcggagggagtagcta 113
Score = 79.8 bits (40), Expect = 8e-15
Identities = 88/104 (84%)
Strand = Plus / Minus
Query: 13 actccctccgtctcaaaataaatcaacttctagctacgaacctggatataggttatgtcc 72
|||||||||| |||| ||||||||||||||| ||||| || ||||| ||| ||| |||
Sbjct: 108 actccctccgcctcacaataaatcaacttctggctacaaatctggacataacctatatcc 49
Query: 73 aggtttgtagccagaagttgatttattgtgaggcagagggagta 116
||||| ||||| ||||||||||||||| || | | |||||||||
Sbjct: 48 aggttcgtagctagaagttgatttattttgggacggagggagta 5
>RF00906;MIR1122;AC229932.1/30140-30028 63629:Oryza minuta
Length = 113
Score = 71.9 bits (36), Expect = 2e-12
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 13 actccctccgtctcaaaataaatcaacttctagctacgaacctggatataggttatgtcc 72
|||||||||||| || || ||| |||||||||||| |||| ||||| |||| |||||||
Sbjct: 108 actccctccgtcccataaaaaaccaacttctagcttcgaatctggacatagcgtatgtcc 49
Query: 73 aggtttgtagccagaagttgattt 96
|| || | ||||||||||||||||
Sbjct: 48 agattcgaagccagaagttgattt 25
Score = 61.9 bits (31), Expect = 2e-09
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 13 actccctccgtctcaaaataaatcaacttctagctacgaacctggatataggttatgtcc 72
|||||||||||| || || |||||||||||| ||| |||| ||||| ||| | |||||||
Sbjct: 6 actccctccgtcccataaaaaatcaacttctggcttcgaatctggacatacgctatgtcc 65
Query: 73 aggtttgtagccagaagttgatttattgtgaggcagagggagtagct 119
|| || | ||| |||||||| ||| || || | | ||||||||||||
Sbjct: 66 agattcgaagctagaagttggttttttatgggacggagggagtagct 112
>RF00906;MIR1122;AC229791.1/69083-69196 63629:Oryza minuta
Length = 114
Score = 65.9 bits (33), Expect = 1e-10
Identities = 73/85 (85%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 13 actccctccgtctca-aaataaatcaacttctagctacgaacctggatataggttatgtc 71
|||||||||||| || ||| |||||||||||| |||||||||||||| | || |||
Sbjct: 6 actccctccgtcacataaaaaaatcaacttctggctacgaacctggacgcacattgcgtc 65
Query: 72 caggtttgtagccagaagttgattt 96
|||||| ||||||||||||||||||
Sbjct: 66 caggttcgtagccagaagttgattt 90
Score = 56.0 bits (28), Expect = 1e-07
Identities = 70/84 (83%)
Strand = Plus / Minus
Query: 13 actccctccgtctcaaaataaatcaacttctagctacgaacctggatataggttatgtcc 72
||||||||| || || || |||||||||||| |||||||||||||| | | ||||
Sbjct: 109 actccctccatcccataaaaaatcaacttctggctacgaacctggacgcaatgtgcgtcc 50
Query: 73 aggtttgtagccagaagttgattt 96
||||| ||||||||||||||||||
Sbjct: 49 aggttcgtagccagaagttgattt 26
>RF00906;MIR1122;ABXC01006480.1/93142-93031 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 13 actccctccgtctcaaaataaatcaacttctagcta 48
|||||||||||| |||||||||||||||||| ||||
Sbjct: 6 actccctccgtcccaaaataaatcaacttctggcta 41
>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
Indica Group
Length = 113
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 actccctccgtctcaaaataaatcaa 38
||||||||||||||||||||||||||
Sbjct: 6 actccctccgtctcaaaataaatcaa 31
>RF00906;MIR1122;AAAA02007310.1/1161-1273 39946:Oryza sativa Indica
Group
Length = 113
Score = 50.1 bits (25), Expect = 7e-06
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 37 aacttctagctacgaacctggatataggttatgtccaggtttgtagccagaagttgattt 96
|||||||||||||||| ||||| ||| | ||||||| || |||||||||||||||||
Sbjct: 84 aacttctagctacgaatctggaagtagcgtttgtccagattcatagccagaagttgattt 25
Query: 97 attgtgaggcagagggagtag 117
|| || | | ||||||||||
Sbjct: 24 tttatgggacggagggagtag 4
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 13 actccctccgtctcaaaataaatcaacttctagctacgaacctgga 58
|||||||||||| || || |||||||||||| |||| ||| |||||
Sbjct: 6 actccctccgtcccataaaaaatcaacttctggctatgaatctgga 51
>RF00906;MIR1122;AAAA02007408.1/10812-10943 39946:Oryza sativa
Indica Group
Length = 132
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 13 actccctccgtctcaaaataaatcaactt 41
|||||||||||||||||||| ||||||||
Sbjct: 127 actccctccgtctcaaaatatatcaactt 99
>RF00906;MIR1122;AP004457.2/96948-96835 39947:Oryza sativa
Japonica Group
Length = 114
Score = 50.1 bits (25), Expect = 7e-06
Identities = 68/81 (83%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 13 actccctccgtctca-aaataaatcaacttctagctacgaacctggatataggttatgtc 71
|||||||||||| || ||| |||||||||||| |||| ||||||||| | | ||| |||
Sbjct: 6 actccctccgtcccataaaaaaatcaacttctggctatgaacctggacacatgttgcgtc 65
Query: 72 caggtttgtagccagaagttg 92
||| ||| ||| |||||||||
Sbjct: 66 cagatttatagtcagaagttg 86
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 13 actccctccgtctcaaaataaatcaact 40
||||||||||||||||||||| ||||||
Sbjct: 115 actccctccgtctcaaaataagtcaact 88
>RF00906;MIR1122;AC145396.3/122873-122984 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 13 actccctccgtctcaaaataaatcaacttctagctacgaacctg 56
|||||||||||| ||||||| | |||||| |||||| |||||||
Sbjct: 107 actccctccgtcccaaaatatagcaacttttagctatgaacctg 64
>RF00906;MIR1122;AP008217.1/3396232-3396120 39947:Oryza sativa
Japonica Group
Length = 113
Score = 48.1 bits (24), Expect = 3e-05
Identities = 87/108 (80%)
Strand = Plus / Minus
Query: 13 actccctccgtctcaaaataaatcaacttctagctacgaacctggatataggttatgtcc 72
|||||||||||| || || ||| ||||||| ||||||||||| || ||| | |||||
Sbjct: 108 actccctccgtcccataaaaaactaacttctggctacgaacctagacgtagtgtgtgtcc 49
Query: 73 aggtttgtagccagaagttgatttattgtgaggcagagggagtagcta 120
|| || || |||||||||||||| || || | | |||||||||||||
Sbjct: 48 agattcataaccagaagttgattttttctgggacggagggagtagcta 1
>RF00906;MIR1122;AAAA02030830.1/874-986 39946:Oryza sativa Indica
Group
Length = 113
Score = 48.1 bits (24), Expect = 3e-05
Identities = 87/108 (80%)
Strand = Plus / Minus
Query: 13 actccctccgtctcaaaataaatcaacttctagctacgaacctggatataggttatgtcc 72
||||||||||||||| || ||| ||||||| |||| |||||| || ||| |||||||
Sbjct: 108 actccctccgtctcataaaaaactaacttctggctatgaacctagacgtagtgtatgtcc 49
Query: 73 aggtttgtagccagaagttgatttattgtgaggcagagggagtagcta 120
|| || || ||||||||||||| || || | | |||||||||||||
Sbjct: 48 agattcataaacagaagttgattttttctgggacggagggagtagcta 1
>RF00906;MIR1122;AAAA02026943.1/18413-18317 39946:Oryza sativa
Indica Group
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 actccctccgtctcaaaataaatcaac 39
|||||||||||||||||||||| ||||
Sbjct: 92 actccctccgtctcaaaataaaccaac 66
>RF00906;MIR1122;AP008207.1/42089526-42089634 39947:Oryza sativa
Japonica Group
Length = 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 17 cctccgtctcaaaataaatcaacttctagctacgaacctgga 58
|||||||||||||||| | |||||| |||||| ||| |||||
Sbjct: 100 cctccgtctcaaaatataacaacttttagctatgaatctgga 59
