miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01025230.1/832-919 39947:Oryza sativa Japonica
Group
Length = 88
Score = 63.9 bits (32), Expect = 7e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 104 tttgactttgaccaaagttaaaacgtcttataacctgaaacgga 147
||||||||||| |||||| ||||| |||||||||||||||||||
Sbjct: 55 tttgactttgatcaaagtcaaaacatcttataacctgaaacgga 12
Score = 61.9 bits (31), Expect = 3e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 104 tttgactttgaccaaagttaaaacgtcttataacctgaaacggaggaagta 154
||||||||||| |||||| ||||| |||||||| |||||||||||| ||||
Sbjct: 34 tttgactttgatcaaagtcaaaacatcttataatctgaaacggagggagta 84
>RF00906;MIR1122;AP005603.3/127883-127741 39947:Oryza sativa
Japonica Group
Length = 143
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 128 gtcttataacctgaaacggaggaagtaa 155
|||||||| |||||||||||||||||||
Sbjct: 113 gtcttatagcctgaaacggaggaagtaa 140
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 128 gtcttataacctgaaacggaggaagta 154
|||||||||||||||||||||| ||||
Sbjct: 31 gtcttataacctgaaacggagggagta 5
>RF00906;MIR1122;AP000492.1/101668-101829 39947:Oryza sativa
Japonica Group
Length = 162
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 128 gtcttataacctgaaacggaggaagta 154
|||||||||| ||||||||||||||||
Sbjct: 31 gtcttataacttgaaacggaggaagta 5
