miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01025230.1/832-919 39947:Oryza sativa Japonica
Group
Length = 88
Score = 61.9 bits (31), Expect = 5e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 228 tttgactttaaccaaagtcaaaacgtcttataacccgaaacggagggagta 278
||||||||| | |||||||||||| |||||||| | |||||||||||||||
Sbjct: 34 tttgactttgatcaaagtcaaaacatcttataatctgaaacggagggagta 84
Score = 58.0 bits (29), Expect = 8e-08
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 228 tttgactttaaccaaagtcaaaacgtcttataacccgaaacggagggag 276
||||||||| | |||||||||||| |||||||||| |||||||| ||||
Sbjct: 55 tttgactttgatcaaagtcaaaacatcttataacctgaaacggatggag 7
Score = 56.0 bits (28), Expect = 3e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 23 agtactccctccgtttcaggttataagacgttttga 58
||||||||||||||||||| |||||||| |||||||
Sbjct: 86 agtactccctccgtttcagattataagatgttttga 51
Score = 50.1 bits (25), Expect = 2e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 22 tagtactccctccgtttcaggttataagacgttttga 58
|||| |||| ||||||||||||||||||| |||||||
Sbjct: 2 tagtgctccatccgtttcaggttataagatgttttga 38
>RF00906;MIR1122;AP005603.3/127883-127741 39947:Oryza sativa
Japonica Group
Length = 143
Score = 60.0 bits (30), Expect = 2e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 22 tagtactccctccgtttcaggttataagac 51
||||||||||||||||||||||||||||||
Sbjct: 2 tagtactccctccgtttcaggttataagac 31
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 252 gtcttataacccgaaacggagggagta 278
||||||||||| |||||||||||||||
Sbjct: 31 gtcttataacctgaaacggagggagta 5
>RF00906;MIR1122;AACV01003992.1/29908-29746 39947:Oryza sativa
Japonica Group
Length = 163
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 24 gtactccctccgtttcaggttataagac 51
|||||||||||||||||| |||||||||
Sbjct: 160 gtactccctccgtttcagattataagac 133
>RF00906;MIR1122;ABXC01006238.1/21919-22080 4558:Sorghum bicolor
(sorghum)
Length = 162
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 23 agtactccctccgtttcaggttataagacgttttg 57
||||||||||||||| || |||||||||||||||
Sbjct: 3 agtactccctccgttccacattataagacgttttg 37
>RF00906;MIR1122;AAAA02033121.1/1765-1675 39946:Oryza sativa
Indica Group
Length = 91
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 25 tactccctccgtttcaggttataagac 51
||||||||| |||||||||||||||||
Sbjct: 5 tactccctctgtttcaggttataagac 31
