miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01025230.1/832-919 39947:Oryza sativa Japonica
Group
Length = 88
Score = 77.8 bits (39), Expect = 8e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 222 tttgactttgaccaaagttaaaacatcttataacctgaaacggagggagta 272
||||||||||| |||||| |||||||||||||| |||||||||||||||||
Sbjct: 34 tttgactttgatcaaagtcaaaacatcttataatctgaaacggagggagta 84
Score = 73.8 bits (37), Expect = 1e-12
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 222 tttgactttgaccaaagttaaaacatcttataacctgaaacggagggag 270
||||||||||| |||||| ||||||||||||||||||||||||| ||||
Sbjct: 55 tttgactttgatcaaagtcaaaacatcttataacctgaaacggatggag 7
>RF00906;MIR1122;AP005603.3/127883-127741 39947:Oryza sativa
Japonica Group
Length = 143
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 247 tcttataacctgaaacggagggagta 272
||||||||||||||||||||||||||
Sbjct: 30 tcttataacctgaaacggagggagta 5
