miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01025230.1/832-919 39947:Oryza sativa Japonica
Group
Length = 88
Score = 71.9 bits (36), Expect = 4e-12
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 215 tttgactttgaccaaagtcaaaccatcttataacctggaacggagggagtac 266
||||||||||| |||||||||| |||||||||| ||| ||||||||||||||
Sbjct: 34 tttgactttgatcaaagtcaaaacatcttataatctgaaacggagggagtac 85
Score = 65.9 bits (33), Expect = 3e-10
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 215 tttgactttgaccaaagtcaaaccatcttataacctggaacggagggag 263
||||||||||| |||||||||| |||||||||||||| |||||| ||||
Sbjct: 55 tttgactttgatcaaagtcaaaacatcttataacctgaaacggatggag 7
Score = 50.1 bits (25), Expect = 2e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 15 gtttcaggttataagacattttgactttggacaaagtcaaa 55
|||||||||||||||| ||||||||||| ||||||||||
Sbjct: 15 gtttcaggttataagatgttttgactttgatcaaagtcaaa 55
Score = 46.1 bits (23), Expect = 3e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 5 tactccctttgtttcaggttataagacattttgactttggacaaagtcaaa 55
|||||||| ||||||| |||||||| ||||||||||| ||||||||||
Sbjct: 84 tactccctccgtttcagattataagatgttttgactttgatcaaagtcaaa 34
>RF00906;MIR1122;AAAA02033121.1/1765-1675 39946:Oryza sativa
Indica Group
Length = 91
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tactccctttgtttcaggttataagac 31
|||||||| ||||||||||||||||||
Sbjct: 5 tactccctctgtttcaggttataagac 31
>RF00906;MIR1122;AP005603.3/127883-127741 39947:Oryza sativa
Japonica Group
Length = 143
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 240 tcttataacctggaacggagggagtac 266
|||||||||||| ||||||||||||||
Sbjct: 30 tcttataacctgaaacggagggagtac 4
