miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02033121.1/1765-1675 39946:Oryza sativa Indica
Group
Length = 91
Score = 65.9 bits (33), Expect = 2e-10
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 122 tgctagaaaatcttataacctgaaacagagggagtat 158
||||||||| |||||||||||||||||||||||||||
Sbjct: 40 tgctagaaagtcttataacctgaaacagagggagtat 4
>RF00906;MIR1122;AP005603.3/127883-127741 39947:Oryza sativa
Japonica Group
Length = 143
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 122 tgctagaaaatcttataacctgaaacagagggagta 157
||||||||| |||||||||||||||| |||||||||
Sbjct: 40 tgctagaaagtcttataacctgaaacggagggagta 5
>RF00906;MIR1122;AACV01003992.1/29908-29746 39947:Oryza sativa
Japonica Group
Length = 163
Score = 54.0 bits (27), Expect = 6e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 117 ggtaatgctagaaaatcttataacctgaaacagagggagtata 159
|||||||||||||| |||||||| |||||| |||||||||||
Sbjct: 45 ggtaatgctagaaagtcttataatatgaaacggagggagtata 3
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 120 aatgctagaaaatcttataacctgaaacagagggagta 157
||||||||||| |||||||| ||||||| |||||||||
Sbjct: 122 aatgctagaaagtcttataatctgaaacggagggagta 159
>RF00906;MIR1122;AAAA02024119.1/11927-11764 39946:Oryza sativa
Indica Group
Length = 164
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 120 aatgctagaaaatcttataacctgaaacagagggagtatata 161
||||||||||| |||||||| |||||| |||||||||||||
Sbjct: 123 aatgctagaaagtcttataatatgaaacggagggagtatata 164
>RF00906;MIR1122;AACV01016547.1/15069-15198 39947:Oryza sativa
Japonica Group
Length = 130
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 120 aatgctagaaaatcttataacctgaaacagagggagta 157
|||||||||||||||||||| |||||| |||||||||
Sbjct: 42 aatgctagaaaatcttataatatgaaacggagggagta 5
Score = 44.1 bits (22), Expect = 6e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 120 aatgctagaaaatcttataacctgaaacagagggagtatata 161
||||||||||| |||||||| |||||| |||| ||||||||
Sbjct: 89 aatgctagaaagtcttataatatgaaacggaggaagtatata 130
>RF00906;MIR1122;ABRL01002327.1/13187-13322 65489:Oryza barthii
Length = 136
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 117 ggtaatgctagaaaatcttataacctgaaacagagggagta 157
|||||||||||||| |||||||| |||||| |||||||||
Sbjct: 92 ggtaatgctagaaagtcttataatttgaaacggagggagta 132
>RF00906;MIR1122;AC223445.1/72991-73152 4538:Oryza glaberrima
(African rice)
Length = 162
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 120 aatgctagaaaatcttataacctgaaacagagggagtat 158
||||||||||| |||||||| |||||| ||||||||||
Sbjct: 42 aatgctagaaagtcttataatatgaaacggagggagtat 4
>RF00906;MIR1122;AAAA02023450.1/14767-14902 39946:Oryza sativa
Indica Group
Length = 136
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 120 aatgctagaaaatcttataacctgaaacagagggagta 157
||||||||||| |||||||| |||||| |||||||||
Sbjct: 42 aatgctagaaagtcttataatatgaaacggagggagta 5
>RF00906;MIR1122;AP008215.1/18276529-18276660 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 120 aatgctagaaaatcttataacctgaaacagagggagta 157
||||||||||| |||||||| |||||| |||||||||
Sbjct: 42 aatgctagaaagtcttataatatgaaacggagggagta 5
>RF00906;MIR1122;AP004764.2/29265-29128 39947:Oryza sativa Japonica
Group
Length = 138
Score = 44.1 bits (22), Expect = 6e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 120 aatgctagaaaatcttataacctgaaacagagggagtatata 161
||||||||||| |||||||| |||||| |||| ||||||||
Sbjct: 42 aatgctagaaagtcttataatatgaaacggaggaagtatata 1
>RF00906;MIR1122;AC145367.2/80971-81106 39947:Oryza sativa Japonica
Group
Length = 136
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 120 aatgctagaaaatcttataacctgaaacagagggagta 157
||||||||||| |||||||| |||||| |||||||||
Sbjct: 42 aatgctagaaagtcttataatatgaaacggagggagta 5
>RF00906;MIR1122;AAAA02027724.1/15381-15250 39946:Oryza sativa
Indica Group
Length = 132
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 120 aatgctagaaaatcttataacctgaaacagagggagta 157
||||||||||| |||||||| |||||| |||||||||
Sbjct: 91 aatgctagaaagtcttataatatgaaacggagggagta 128
>RF00906;MIR1122;AP008214.1/27990633-27990493 39947:Oryza sativa
Japonica Group
Length = 141
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 120 aatgctagaaaatcttataacctgaaacagagggagta 157
||||||||||| |||||||| |||||| |||||||||
Sbjct: 42 aatgctagaaagtcttataatatgaaacggagggagta 5
>RF00906;MIR1122;AP000492.1/101668-101829 39947:Oryza sativa
Japonica Group
Length = 162
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 120 aatgctagaaaatcttataacctgaaacagagggagta 157
||||||||||| ||||||||| |||||| |||| ||||
Sbjct: 121 aatgctagaaagtcttataacttgaaacggaggtagta 158
>RF00906;MIR1122;CR855160.1/66114-66007 4530:Oryza sativa (rice)
Length = 108
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 120 aatgctagaaaatcttataacctgaaacagagggagta 157
||||||||||| |||||||| |||||| |||||||||
Sbjct: 42 aatgctagaaagtcttataatatgaaacggagggagta 5
>RF00906;MIR1122;AL844497.4/117501-117363 4530:Oryza sativa (rice)
Length = 139
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 120 aatgctagaaaatcttataacctgaaacagagggagta 157
||||||||||| |||||||| ||||||||||| ||||
Sbjct: 98 aatgctagaaagtcttataatatgaaacagaggaagta 135
>RF00906;MIR1122;AP003023.2/81435-81277 39947:Oryza sativa Japonica
Group
Length = 159
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 124 ctagaaaatcttataacctgaaacagagggagta 157
||||||| |||||||| ||||||||||||||||
Sbjct: 38 ctagaaagtcttataatatgaaacagagggagta 5
