miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02003707.1/8900-8747 39946:Oryza sativa Indica
Group
Length = 154
Score = 81.8 bits (41), Expect = 1e-15
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 1 atctaggaccagatatgatatattctagtacgataaatctagatatatgtatgtactgat 60
|||||||||| ||| ||| ||||||||||||||| ||| | ||||||| ||||| | |||
Sbjct: 30 atctaggaccggatgtgacatattctagtacgatgaatttggatatatatatgtccagat 89
Query: 61 ttgtagtactaggatgtatcacatc 85
| ||||||||||||||| |||||||
Sbjct: 90 tcgtagtactaggatgtgtcacatc 114
>RF00906;MIR1122;AAAA02035060.1/17205-17050 39946:Oryza sativa
Indica Group
Length = 156
Score = 56.0 bits (28), Expect = 8e-08
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 11 agatatgatatattctagtacgataaatctagatatatgtatgtactgatttgtagtact 70
|||| ||| ||| ||||||||||| ||||| || |||||||||| | |||| || ||||
Sbjct: 41 agatgtgacataatctagtacgatgaatctggacatatgtatgtccagattcataatact 100
Query: 71 aggatgtatcacatct 86
||||||| ||||||||
Sbjct: 101 aggatgtgtcacatct 116
>RF00906;MIR1122;AP008218.1/23548296-23548451 39947:Oryza sativa
Japonica Group
Length = 156
Score = 56.0 bits (28), Expect = 8e-08
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 11 agatatgatatattctagtacgataaatctagatatatgtatgtactgatttgtagtact 70
|||| ||| ||| ||||||||||| ||||| || |||||||||| | |||| || ||||
Sbjct: 116 agatgtgacataatctagtacgatgaatctggacatatgtatgtccagattcataatact 57
Query: 71 aggatgtatcacatct 86
||||||| ||||||||
Sbjct: 56 aggatgtgtcacatct 41
>RF00906;MIR1122;AP002483.1/24463-24606 39947:Oryza sativa
Japonica Group
Length = 144
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 16 tgatatattctagtacgataaatctagatatatgtatgt 54
||||||||||||||||||| ||||| || ||||||||||
Sbjct: 46 tgatatattctagtacgatgaatctggacatatgtatgt 84
>RF00906;MIR1122;AAAA02031907.1/29073-28940 39946:Oryza sativa
Indica Group
Length = 134
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 1 atctaggaccagatatgatatattctagtacgataaatctaga 43
|||||||||| ||| ||| ||||||||||||||| ||||||||
Sbjct: 31 atctaggaccggatgtgacatattctagtacgatgaatctaga 73
>RF00906;MIR1122;AACV01013612.1/22689-22534 39947:Oryza sativa
Japonica Group
Length = 156
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 12 gatatgatatattctagtacgataaatctagata 45
|||||||||||| ||||||| |||||||||||||
Sbjct: 42 gatatgatatatcctagtacaataaatctagata 75
>RF00906;MIR1122;ABRL01000294.1/23842-24000 65489:Oryza barthii
Length = 159
Score = 46.1 bits (23), Expect = 8e-05
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 20 atattctagtacgataaatctagatatatgtatgtactgatttgtagtactaggatgtat 79
||||||||||||||| ||||| || | ||||||| | |||| |||||||||| |||| |
Sbjct: 50 atattctagtacgatgaatctggacagatgtatgctcagattcgtagtactagaatgtgt 109
Query: 80 cacatct 86
|| ||||
Sbjct: 110 catatct 116
>RF00906;MIR1122;AAAA02021026.1/44639-44772 39946:Oryza sativa
Indica Group
Length = 134
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 atttgtagtactaggatgtatcacatc 85
||||||||||||||||||| |||||||
Sbjct: 68 atttgtagtactaggatgtgtcacatc 94
>RF00906;MIR1122;AAAA02028211.1/1243-1359 39946:Oryza sativa
Indica Group
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 66 gtactaggatgtatcacatcta 87
||||||||||||||||||||||
Sbjct: 61 gtactaggatgtatcacatcta 40
>RF00906;MIR1122;AC215820.3/114332-114188 4537:Oryza punctata
Length = 145
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 63 gtagtactaggatgtatcacat 84
||||||||||||||||||||||
Sbjct: 64 gtagtactaggatgtatcacat 43
>RF00906;MIR1122;AAAA02010090.1/14271-14425 39946:Oryza sativa
Indica Group
Length = 155
Score = 44.1 bits (22), Expect = 3e-04
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 20 atattctagtacgataaatctagatatatgtatgtactgatttgtagtactaggatgtat 79
||||||||||| |||||||| || | |||||||| | |||| ||||||||| |||| |
Sbjct: 49 atattctagtataataaatctggacaaatgtatgtccagattcatagtactagaatgtgt 108
Query: 80 cacatc 85
||||||
Sbjct: 109 cacatc 114
