miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01007974.1/18422-18267 39947:Oryza sativa
Japonica Group
Length = 156
Score = 71.9 bits (36), Expect = 3e-12
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 43 gatgtgacatattctattacaataaatctggatagaggtatgtttaaattcatagtacta 102
||||||||| |||||| ||||| |||||||| |||||||||| | |||| ||||||||
Sbjct: 42 gatgtgacacattctagtacaacgaatctggacagaggtatgtccagattcgtagtacta 101
Query: 103 tgatgtgtcacatctaatactagattatatttttatggga 142
||||||||||||| | |||||| || |||||||||||
Sbjct: 102 ggatgtgtcacatccagtactaggttggttttttatggga 141
>RF00906;MIR1122;AACV01010622.1/23023-23178 39947:Oryza sativa
Japonica Group
Length = 156
Score = 67.9 bits (34), Expect = 4e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 43 gatgtgacatattctattacaataaatctggatagaggtatgtttaaattcatagtacta 102
|||||||||||||||| || ||| ||||||||||||| ||||| | |||| |||| |||
Sbjct: 42 gatgtgacatattctagtataatgaatctggatagagatatgtccagattcgtagtccta 101
Query: 103 tgatgtgtcacatc 116
|||||||||||||
Sbjct: 102 ggatgtgtcacatc 115
>RF00906;MIR1122;AC037426.12/45307-45458 39947:Oryza sativa Japonica
Group
Length = 152
Score = 61.9 bits (31), Expect = 3e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 88 aaattcatagtactatgatgtgtcacatctaatactagattatatttttatggga 142
||||||||||||||| |||||||||||| |||||||| ||| |||||||||||
Sbjct: 83 aaattcatagtactacaatgtgtcacatccaatactaggttagctttttatggga 137
>RF00906;MIR1122;AAAA02010090.1/14271-14425 39946:Oryza sativa
Indica Group
Length = 155
Score = 60.0 bits (30), Expect = 1e-08
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 47 tgacatattctattacaataaatctggatagaggtatgtttaaattcatagtactatgat 106
|||||||||||| || |||||||||||| | | |||||| | ||||||||||||| ||
Sbjct: 45 tgacatattctagtataataaatctggacaaatgtatgtccagattcatagtactagaat 104
Query: 107 gtgtcacatc 116
||||||||||
Sbjct: 105 gtgtcacatc 114
>RF00906;MIR1122;AP008218.1/23548296-23548451 39947:Oryza sativa
Japonica Group
Length = 156
Score = 60.0 bits (30), Expect = 1e-08
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 43 gatgtgacatattctattacaataaatctggatagaggtatgtttaaattcatagtacta 102
||||||||||| |||| ||| || |||||||| | | |||||| | ||||||| |||||
Sbjct: 115 gatgtgacataatctagtacgatgaatctggacatatgtatgtccagattcataatacta 56
Query: 103 tgatgtgtcacatctaatactagatt 128
|||||||||||||| |||||||||
Sbjct: 55 ggatgtgtcacatctggtactagatt 30
>RF00906;MIR1122;AAAA02005552.1/15961-15806 39946:Oryza sativa
Indica Group
Length = 156
Score = 58.0 bits (29), Expect = 4e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 48 gacatattctattacaataaatctggatagaggtatgtttaaattcatagtactatgatg 107
||||||||||| ||| ||||||||||| | | ||||||| | ||||| |||| || ||||
Sbjct: 47 gacatattctaatactataaatctggacaaatgtatgttcagattcacagtattaggatg 106
Query: 108 tgtcacatc 116
|||||||||
Sbjct: 107 tgtcacatc 115
>RF00906;MIR1122;AAAA02035060.1/17205-17050 39946:Oryza sativa
Indica Group
Length = 156
Score = 56.0 bits (28), Expect = 2e-07
Identities = 82/100 (82%)
Strand = Plus / Plus
Query: 43 gatgtgacatattctattacaataaatctggatagaggtatgtttaaattcatagtacta 102
||||||||||| |||| ||| || |||||||| | | |||||| | ||||||| |||||
Sbjct: 42 gatgtgacataatctagtacgatgaatctggacatatgtatgtccagattcataatacta 101
Query: 103 tgatgtgtcacatctaatactagattatatttttatggga 142
|||||||||||||| |||||| || |||||||||||
Sbjct: 102 ggatgtgtcacatctggtactaggttggttttttatggga 141
>RF00906;MIR1122;ABRL01000294.1/23842-24000 65489:Oryza barthii
Length = 159
Score = 54.0 bits (27), Expect = 6e-07
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 43 gatgtgacatattctattacaataaatctggatagaggtatgtttaaattcatagtacta 102
|||||||||||||||| ||| || |||||||| ||| ||||| | | |||| ||||||||
Sbjct: 42 gatgtgacatattctagtacgatgaatctggacagatgtatgctcagattcgtagtacta 101
Query: 103 tgatgtgtcacatct 117
|||||||| ||||
Sbjct: 102 gaatgtgtcatatct 116
>RF00906;MIR1122;AAAA02003707.1/8900-8747 39946:Oryza sativa Indica
Group
Length = 154
Score = 54.0 bits (27), Expect = 6e-07
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 43 gatgtgacatattctattacaataaatctggatagaggtatgtttaaattcatagtacta 102
|||||||||||||||| ||| || ||| |||||| | ||||| | |||| ||||||||
Sbjct: 41 gatgtgacatattctagtacgatgaatttggatatatatatgtccagattcgtagtacta 100
Query: 103 tgatgtgtcacatctaatactag 125
||||||||||||| |||||||
Sbjct: 101 ggatgtgtcacatccgatactag 123
>RF00906;MIR1122;AAAA02020879.1/5788-5634 39946:Oryza sativa Indica
Group
Length = 155
Score = 54.0 bits (27), Expect = 6e-07
Identities = 70/83 (84%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 43 gatgtgacatattctattacaataaatctggatagaggtatgtttaaattcatagtacta 102
||||||||| ||||||| ||||| |||||||||||| ||||| | |||||||||| ||
Sbjct: 42 gatgtgacacattctat-acaatgaatctggatagatatatgtccagattcatagtatta 100
Query: 103 tgatgtgtcacatctaatactag 125
|||||||||| ||| ||||||
Sbjct: 101 gaatgtgtcacaactattactag 123
>RF00906;MIR1122;AP008210.1/21918444-21918599 39947:Oryza sativa
Japonica Group
Length = 156
Score = 50.1 bits (25), Expect = 1e-05
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 90 attcatagtactatgatgtgtcacatctaatactagattatatttttatggga 142
||||||||||||| ||||||||||||| ||||||| || |||||||||||
Sbjct: 89 attcatagtactagtatgtgtcacatctgatactaggttggttttttatggga 141
>RF00906;MIR1122;AP004885.3/67265-67119 39947:Oryza sativa Japonica
Group
Length = 147
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 90 attcatagtactatgatgtgtcacatct 117
|||||||||||||||| |||||||||||
Sbjct: 68 attcatagtactatgaagtgtcacatct 41
>RF00906;MIR1122;AACV01023991.1/17005-17122 39947:Oryza sativa
Japonica Group
Length = 118
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 94 atagtactatgatgtgtcacatct 117
||||||||||||||||||||||||
Sbjct: 67 atagtactatgatgtgtcacatct 90
>RF00906;MIR1122;AAAA02033498.1/22640-22523 39946:Oryza sativa
Indica Group
Length = 118
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 94 atagtactatgatgtgtcacatct 117
||||||||||||||||||||||||
Sbjct: 67 atagtactatgatgtgtcacatct 90
>RF00906;MIR1122;AC128646.5/47101-47248 39947:Oryza sativa
Japonica Group
Length = 148
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 43 gatgtgacatattctattacaataaatctgga 74
||||||||| |||||| |||||||||||||||
Sbjct: 41 gatgtgacacattctagtacaataaatctgga 72
>RF00906;MIR1122;AAAA02021292.1/4370-4241 39946:Oryza sativa Indica
Group
Length = 130
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 90 attcatagtactatgatgtgtcacatc 116
||||||||||||| |||||||||||||
Sbjct: 63 attcatagtactaggatgtgtcacatc 89
>RF00906;MIR1122;AC134925.4/86794-86934 39947:Oryza sativa Japonica
Group
Length = 141
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 90 attcatagtactatgatgtgtcacatc 116
|||||||||| ||||||||||||||||
Sbjct: 77 attcatagtattatgatgtgtcacatc 103
>RF00906;MIR1122;AP005098.4/61806-61935 39947:Oryza sativa Japonica
Group
Length = 130
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 90 attcatagtactatgatgtgtcacatc 116
||||||||||||| |||||||||||||
Sbjct: 68 attcatagtactaggatgtgtcacatc 42
>RF00906;MIR1122;AP008207.1/915692-915536 39947:Oryza sativa
Japonica Group
Length = 157
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 83 tgtttaaattcatagtactatgatgtgtcacatct 117
|||||| |||||| ||||||||| |||||||||||
Sbjct: 75 tgtttagattcattgtactatgaagtgtcacatct 41
>RF00906;MIR1122;AC027658.1/92773-92617 39947:Oryza sativa Japonica
Group
Length = 157
Score = 46.1 bits (23), Expect = 2e-04
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 43 gatgtgacatattctattacaataaatctggataga-ggtatgtttaaattcatagtact 101
|||||||||||| ||| |||||||||| |||| ||| |||||| || |||||| ||||
Sbjct: 116 gatgtgacatatcctaatacaataaatttggacagaccgtatgtctagattcattatact 57
Query: 102 atgatgtgtcacatc 116
| ||| |||||||||
Sbjct: 56 aggatatgtcacatc 42
>RF00906;MIR1122;AP004706.3/101051-100895 39947:Oryza sativa
Japonica Group
Length = 157
Score = 46.1 bits (23), Expect = 2e-04
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 43 gatgtgacatattctattacaataaatctggataga-ggtatgtttaaattcatagtact 101
|||||||||||| ||| |||||| |||||||| | | ||||||| | ||| || |||||
Sbjct: 116 gatgtgacatatcctagtacaatcaatctggacatacggtatgtccagatttattgtact 57
Query: 102 atgatgtgtcacatc 116
|| ||||||||||||
Sbjct: 56 atcatgtgtcacatc 42
