miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01007974.1/18422-18267 39947:Oryza sativa
Japonica Group
Length = 156
Score = 101 bits (51), Expect = 2e-21
Identities = 87/99 (87%), Gaps = 5/99 (5%)
Strand = Plus / Plus
Query: 24 atgtgacacattatagtacaacgaatctggatagaaatatgtctagattcgtagtactag 83
|||||||||||| |||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct: 43 atgtgacacattctagtacaacgaatctggacagaggtatgtccagattcgtagtactag 102
Query: 84 gatgtgtcgcatcgagt-----gttggttttttatggga 117
|||||||| |||| ||| |||||||||||||||||
Sbjct: 103 gatgtgtcacatccagtactaggttggttttttatggga 141
Score = 50.1 bits (25), Expect = 7e-06
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 24 atgtgacacattatagtacaacgaatctggatagaaatatgtctagattcgtagtactag 83
||||||||||| |||||| ||||||||||| | | | |||| |||||||| |||||||
Sbjct: 114 atgtgacacatcctagtactacgaatctggacatacctctgtccagattcgttgtactag 55
Query: 84 gatgtgtcgcatc 96
||||||| ||||
Sbjct: 54 aatgtgtcacatc 42
>RF00906;MIR1122;AC092779.5/114881-115036 39947:Oryza sativa
Japonica Group
Length = 156
Score = 81.8 bits (41), Expect = 2e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 24 atgtgacacattatagtacaacgaatctggatagaaatatgtctagattcgtagtactag 83
||||||||||| |||||||||||||||||| || ||| |||| |||||||| |||||||
Sbjct: 43 atgtgacacatcctagtacaacgaatctggacagtaatttgtccagattcgttgtactag 102
Query: 84 gatgtgtcgcatc 96
|||||||| ||||
Sbjct: 103 gatgtgtcacatc 115
Score = 60.0 bits (30), Expect = 7e-09
Identities = 65/74 (87%), Gaps = 2/74 (2%)
Strand = Plus / Minus
Query: 24 atgtgacacattatagtacaacgaatctggatagaaata-tgtctagattcgtagtacta 82
||||||||||| |||||||||||||||||| | || || |||| |||||||| ||||||
Sbjct: 114 atgtgacacatcctagtacaacgaatctggaca-aattactgtccagattcgttgtacta 56
Query: 83 ggatgtgtcgcatc 96
||||||||| ||||
Sbjct: 55 ggatgtgtcacatc 42
>RF00906;MIR1122;AACV01010622.1/23023-23178 39947:Oryza sativa
Japonica Group
Length = 156
Score = 81.8 bits (41), Expect = 2e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 24 atgtgacacattatagtacaacgaatctggatagaaatatgtctagattcgtagtactag 83
|||||||| ||| ||||| || ||||||||||||| ||||||| ||||||||||| ||||
Sbjct: 43 atgtgacatattctagtataatgaatctggatagagatatgtccagattcgtagtcctag 102
Query: 84 gatgtgtcgcatc 96
|||||||| ||||
Sbjct: 103 gatgtgtcacatc 115
>RF00906;MIR1122;AAAA02003707.1/8900-8747 39946:Oryza sativa Indica
Group
Length = 154
Score = 73.8 bits (37), Expect = 4e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 24 atgtgacacattatagtacaacgaatctggatagaaatatgtctagattcgtagtactag 83
|||||||| ||| |||||| | |||| |||||| | ||||||| ||||||||||||||||
Sbjct: 42 atgtgacatattctagtacgatgaatttggatatatatatgtccagattcgtagtactag 101
Query: 84 gatgtgtcgcatc 96
|||||||| ||||
Sbjct: 102 gatgtgtcacatc 114
>RF00906;MIR1122;AACV01013467.1/37098-37256 39947:Oryza sativa
Japonica Group
Length = 159
Score = 65.9 bits (33), Expect = 1e-10
Identities = 64/72 (88%), Gaps = 3/72 (4%)
Strand = Plus / Minus
Query: 28 gacacattatagtacaacgaatctggatagaaa-ta--tgtctagattcgtagtactagg 84
||||||| |||||| ||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 113 gacacatcctagtactacgaatctggatagacactacttgtctagattcgtagtactagg 54
Query: 85 atgtgtcgcatc 96
||||||| ||||
Sbjct: 53 atgtgtcccatc 42
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 68 agattcgtagtactaggatgtgtc 91
||||||||||||||||||||||||
Sbjct: 90 agattcgtagtactaggatgtgtc 113
>RF00906;MIR1122;AAAA02010900.1/7833-7673 39946:Oryza sativa Indica
Group
Length = 161
Score = 65.9 bits (33), Expect = 1e-10
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 27 tgacacattatagtacaacgaatctggatagaaatatgtctagattcgtagtactaggat 86
|||||||| |||||| ||||||||||| ||| ||||||| |||||| ||||||||||||
Sbjct: 112 tgacacatcctagtactacgaatctggacagatatatgtccagattcatagtactaggat 53
Query: 87 gtgtc 91
||||
Sbjct: 52 atgtc 48
Score = 54.0 bits (27), Expect = 4e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 37 tagtacaacgaatctggatagaaatatgtctagattcgtagtactaggatgtgtc 91
|||||| | ||||||||| | | || |||| ||||||||||||||||||||||||
Sbjct: 57 tagtactatgaatctggacatatatctgtccagattcgtagtactaggatgtgtc 111
>RF00906;MIR1122;AAAA02020879.1/5788-5634 39946:Oryza sativa Indica
Group
Length = 155
Score = 63.9 bits (32), Expect = 4e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 24 atgtgacacattatagtacaacgaatctggatagaaatatgtctagattcgtagtactag 83
|||||||||||| || ||||| ||||||||||||| ||||||| |||||| ||||| |||
Sbjct: 43 atgtgacacattcta-tacaatgaatctggatagatatatgtccagattcatagtattag 101
Query: 84 gatgtgtc 91
|||||||
Sbjct: 102 aatgtgtc 109
>RF00906;MIR1122;AACV01002075.1/518-362 39947:Oryza sativa Japonica
Group
Length = 157
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 62 atgtctagattcgtagtactaggatgtgtcgcatc 96
|||||||||||||||||||||||||||||| ||||
Sbjct: 82 atgtctagattcgtagtactaggatgtgtcccatc 116
>RF00906;MIR1122;AAAA02003606.1/3920-3764 39946:Oryza sativa Indica
Group
Length = 157
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 62 atgtctagattcgtagtactaggatgtgtcgcatc 96
|||||||||||||||||||||||||||||| ||||
Sbjct: 82 atgtctagattcgtagtactaggatgtgtcccatc 116
>RF00906;MIR1122;AACV01017146.1/25916-25760 39947:Oryza sativa
Japonica Group
Length = 157
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 24 atgtgacacattatagtacaacgaatctgga 54
|||||||||||||||||||||||||||||||
Sbjct: 115 atgtgacacattatagtacaacgaatctgga 85
>RF00906;MIR1122;AP008209.1/35560975-35561101 39947:Oryza sativa
Japonica Group
Length = 127
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 63 tgtctagattcgtagtactaggatgtgtcgcatc 96
||||||||||||||||||||||||||||| ||||
Sbjct: 75 tgtctagattcgtagtactaggatgtgtcacatc 42
>RF00906;MIR1122;AP008212.1/202637-202758 39947:Oryza sativa
Japonica Group
Length = 122
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 63 tgtctagattcgtagtactaggatgtgtcgcatc 96
||||||||||||||||||||||||||||| ||||
Sbjct: 48 tgtctagattcgtagtactaggatgtgtcacatc 81
>RF00906;MIR1122;AAAA02031413.1/6510-6355 39946:Oryza sativa Indica
Group
Length = 156
Score = 58.0 bits (29), Expect = 3e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 24 atgtgacacattatagtacaacgaatctggatagaaatatgtctagattcgtagtactag 83
|||||| |||| ||| || ||||||| | |||||||| ||||||||||||| |||||||
Sbjct: 43 atgtgatacatcataatataacgaatttagatagaaagttgtctagattcgttgtactag 102
Query: 84 gatgt 88
|||||
Sbjct: 103 gatgt 107
>RF00906;MIR1122;AP003866.3/59767-59922 39947:Oryza sativa Japonica
Group
Length = 156
Score = 58.0 bits (29), Expect = 3e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 28 gacacattatagtacaacgaatctggatagaaatatgtctagattcgtagtactaggatg 87
|||||||| |||||||||||||||||| || ||| || |||||||| ||||||||| |
Sbjct: 47 gacacattctagtacaacgaatctggacaggggtatatccagattcgttgtactaggaag 106
Query: 88 tgtcgcatc 96
|||| ||||
Sbjct: 107 tgtctcatc 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 37 tagtacaacgaatctggatagaaatatgtctagattcgtagtactaggatgtgtcgcatc 96
|||||||||||||||||||| | |||| |||||||| ||||||| ||||||| ||||
Sbjct: 101 tagtacaacgaatctggatatacccctgtccagattcgttgtactagaatgtgtcccatc 42
>RF00906;MIR1122;AAAA02032049.1/7937-7781 39946:Oryza sativa Indica
Group
Length = 157
Score = 56.0 bits (28), Expect = 1e-07
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 24 atgtgacacattatagtacaacgaatctggatagaaa-tatgtctagattcgtagtacta 82
|||||||||||| |||||||||||||||||| | ||| |||| |||||||| ||||||
Sbjct: 115 atgtgacacattctagtacaacgaatctggacataaagcctgtccagattcgttgtacta 56
Query: 83 ggat 86
||||
Sbjct: 55 ggat 52
>RF00906;MIR1122;AAAA02018390.1/16986-17138 39946:Oryza sativa
Indica Group
Length = 153
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 24 atgtgacacattatagtacaacgaatctgga 54
||||||||| |||||||||||||||||||||
Sbjct: 115 atgtgacactttatagtacaacgaatctgga 85
>RF00906;MIR1122;AL512542.2/7629-7514 4530:Oryza sativa (rice)
Length = 116
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 62 atgtctagattcgtagtactaggatgtgtcgcatc 96
|||||||||||| ||||||||||||||||| ||||
Sbjct: 76 atgtctagattcttagtactaggatgtgtcacatc 42
>RF00906;MIR1122;AACV01013846.1/34700-34544 39947:Oryza sativa
Japonica Group
Length = 157
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 24 atgtgacacattatagtacaacgaatctgga 54
||||||||| |||||||||||||||||||||
Sbjct: 43 atgtgacactttatagtacaacgaatctgga 73
>RF00906;MIR1122;ABRL01000514.1/8970-9117 65489:Oryza barthii
Length = 148
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 62 atgtctagattcgtagtactaggatgtgtcgcatc 96
|||||||||||||||||||||||||| ||| ||||
Sbjct: 76 atgtctagattcgtagtactaggatgggtctcatc 42
>RF00906;MIR1122;ABRL01000294.1/23842-24000 65489:Oryza barthii
Length = 159
Score = 52.0 bits (26), Expect = 2e-06
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 10 gaatctagctctgtatgtgacacattatagtacaacgaatctggatagaaatatgtctag 69
|||||||| ||| |||||||| ||| |||||| | ||||||||| ||| |||| ||
Sbjct: 29 gaatctagaactggatgtgacatattctagtacgatgaatctggacagatgtatgctcag 88
Query: 70 attcgtagtactaggatgtgtc 91
|||||||||||||| |||||||
Sbjct: 89 attcgtagtactagaatgtgtc 110
>RF00906;MIR1122;ABRL01001045.1/1775-1911 65489:Oryza barthii
Length = 137
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 27 tgacacattatagtacaacgaatctggata 56
||||||||| ||||||||||||||||||||
Sbjct: 47 tgacacattctagtacaacgaatctggata 76
>RF00906;MIR1122;AAAA02004369.1/19477-19347 39946:Oryza sativa
Indica Group
Length = 131
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 63 tgtctagattcgtagtactaggatgt 88
||||||||||||||||||||||||||
Sbjct: 72 tgtctagattcgtagtactaggatgt 47
>RF00906;MIR1122;AK288631.1/1276-1390 39947:Oryza sativa Japonica
Group
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 63 tgtctagattcgtagtactaggatgtgtcgcatc 96
||||||||||||| ||||||||||||||| ||||
Sbjct: 41 tgtctagattcgttgtactaggatgtgtcacatc 74
>RF00906;MIR1122;AAAA02013022.1/7455-7611 39946:Oryza sativa Indica
Group
Length = 157
Score = 52.0 bits (26), Expect = 2e-06
Identities = 57/66 (86%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 22 gtatgtgacacattatagtacaacgaatctggataga-aatatgtctagattcgtagtac 80
|||||||||| ||| |||||| | ||||||||||| | | |||||| |||||| ||||||
Sbjct: 41 gtatgtgacatattctagtactatgaatctggatatacattatgtccagattcatagtac 100
Query: 81 taggat 86
||||||
Sbjct: 101 taggat 106
>RF00906;MIR1122;AP008209.1/29659053-29658899 39947:Oryza sativa
Japonica Group
Length = 155
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 37 tagtacaacgaatctggatagaaatatgtctagattcgtagtactaggat 86
|||||| ||||||||| | || | |||||||||||||||||||||||||
Sbjct: 56 tagtactacgaatctgaacagggacatgtctagattcgtagtactaggat 105
>RF00906;MIR1122;AP001073.1/31422-31289 39947:Oryza sativa
Japonica Group
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 63 tgtctagattcgtagtactaggatgtgtcgcatc 96
|||| |||||||||||||||||||||||| ||||
Sbjct: 60 tgtccagattcgtagtactaggatgtgtcacatc 93
>RF00906;MIR1122;AACV01023857.1/20372-20486 39947:Oryza sativa
Japonica Group
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 63 tgtctagattcgtagtactaggatgtgtcgcatc 96
|||| |||||||||||||||||||||||| ||||
Sbjct: 62 tgtccagattcgtagtactaggatgtgtcccatc 95
>RF00906;MIR1122;AP008209.1/32841988-32841849 39947:Oryza sativa
Japonica Group
Length = 140
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 63 tgtctagattcgtagtactaggatgtgtcgcatc 96
|||| |||||||||||||||||||||||| ||||
Sbjct: 75 tgtccagattcgtagtactaggatgtgtcccatc 42
>RF00906;MIR1122;AAAA02020247.1/9682-9526 39946:Oryza sativa Indica
Group
Length = 157
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 28 gacacattatagtacaacgaatctggata 56
||||| |||||||||||||||||||||||
Sbjct: 111 gacactttatagtacaacgaatctggata 83
>RF00906;MIR1122;AAAA02014808.1/30258-30413 39946:Oryza sativa
Indica Group
Length = 156
Score = 50.1 bits (25), Expect = 7e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 34 ttatagtacaacgaatctggatagaaatatgtctagattcgtagtacta 82
||||||||||| ||||||||||| || ||||||||||||| ||||||
Sbjct: 53 ttatagtacaatgaatctggatatttatctgtctagattcgttgtacta 101
>RF00906;MIR1122;AL606686.3/85873-85713 39947:Oryza sativa Japonica
Group
Length = 161
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 atgtctagattcgtagtactaggat 86
|||||||||||||||||||||||||
Sbjct: 86 atgtctagattcgtagtactaggat 110
>RF00906;MIR1122;AAAA02035149.1/48296-48436 39946:Oryza sativa
Indica Group
Length = 141
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 27 tgacacattatagtacaacgaatctggat 55
||||||||| |||||||||||||||||||
Sbjct: 46 tgacacattctagtacaacgaatctggat 74
>RF00906;MIR1122;AAAA02029204.1/1438-1301 39946:Oryza sativa
Indica Group
Length = 138
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 24 atgtgacacattatagtacaacgaatctggata 56
|||||||||||| |||||| |||||||||||||
Sbjct: 43 atgtgacacattttagtactacgaatctggata 75
>RF00906;MIR1122;AC025905.3/47917-48072 4530:Oryza sativa (rice)
Length = 156
Score = 50.1 bits (25), Expect = 7e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 34 ttatagtacaacgaatctggatagaaatatgtctagattcgtagtacta 82
|||||| |||||||||||||| ||| | ||||| |||||||| ||||||
Sbjct: 53 ttataggacaacgaatctggacagatacatgtccagattcgttgtacta 101
>RF00906;MIR1122;AC135864.5/73183-73340 39947:Oryza sativa
Japonica Group
Length = 158
Score = 50.1 bits (25), Expect = 7e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 40 tacaacgaatctggatagaaatatgtctagattcgtagtactaggatgtgtcgcatc 96
||||||||| ||||| || | |||||| |||||||| ||| ||||||||||| ||||
Sbjct: 98 tacaacgaaactggacaggactatgtccagattcgtcgtattaggatgtgtcccatc 42
>RF00906;MIR1122;AAAA02016998.1/2818-2950 39946:Oryza sativa
Indica Group
Length = 133
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 63 tgtctagattcgtagtactaggatgtgtc 91
|||||||||||||||||||||||| ||||
Sbjct: 59 tgtctagattcgtagtactaggatatgtc 87
>RF00906;MIR1122;AAAA02011336.1/16807-16694 39946:Oryza sativa
Indica Group
Length = 114
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 68 agattcgtagtactaggatgtgtcgcatc 96
|||||||||||||||||||||||| ||||
Sbjct: 66 agattcgtagtactaggatgtgtcacatc 38
>RF00906;MIR1122;AACV01012191.1/7968-7814 39947:Oryza sativa
Japonica Group
Length = 155
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 68 agattcgtagtactaggatgtgtcgcatc 96
|||||||||||||||||||||||| ||||
Sbjct: 70 agattcgtagtactaggatgtgtcacatc 42
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 68 agattcgtagtactaggatgtgtcgcatc 96
|||||||||||||||||||||||| ||||
Sbjct: 86 agattcgtagtactaggatgtgtcacatc 114
>RF00906;MIR1122;AC097111.2/81392-81238 39947:Oryza sativa Japonica
Group
Length = 155
Score = 50.1 bits (25), Expect = 7e-06
Identities = 52/61 (85%), Gaps = 5/61 (8%)
Strand = Plus / Plus
Query: 62 atgtctagattcgtagtactaggatgtgtcgcatcgagt-----gttggttttttatggg 116
|||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 80 atgtctagattcgttttactaggatgtgtcacatccagtcctaggttggttttttatggg 139
Query: 117 a 117
|
Sbjct: 140 a 140
>RF00906;MIR1122;AC084282.6/14827-14672 39947:Oryza sativa Japonica
Group
Length = 156
Score = 50.1 bits (25), Expect = 7e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 44 acgaatctggatagaaatatgtctagattcgtagtactaggatgtgtcgcatc 96
||||||||||||| || ||||| ||||||||||| |||| ||||||| ||||
Sbjct: 63 acgaatctggataagaacatgtccagattcgtagttctagaatgtgtcacatc 115
>RF00906;MIR1122;ABRL01002011.1/9416-9570 65489:Oryza barthii
Length = 155
Score = 50.1 bits (25), Expect = 7e-06
Identities = 62/73 (84%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 24 atgtgacacattatagtacaacgaatctggatagaaatatgtctagattcgtagtactag 83
|||||||| ||| |||||| ||||||||||| ||| |||| |||||||||||||| |
Sbjct: 43 atgtgacatattctagtactacgaatctggacagaggattgtccagattcgtagtact-g 101
Query: 84 gatgtgtcgcatc 96
|||||||| ||||
Sbjct: 102 gatgtgtcacatc 114
>RF00906;MIR1122;AC135208.3/104034-103893 39947:Oryza sativa
Japonica Group
Length = 142
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 60 atatgtctagattcgtagtactaggatgtgtcgcatc 96
||||||| |||||||||||| ||||||||||| ||||
Sbjct: 65 atatgtccagattcgtagtaataggatgtgtcacatc 101
>RF00906;MIR1122;AP008213.1/14562972-14563105 39947:Oryza sativa
Japonica Group
Length = 134
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 65 tctagattcgtagtactaggatgtgtcgcatc 96
||||||||||||||||||| ||||||| ||||
Sbjct: 60 tctagattcgtagtactagaatgtgtcacatc 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 24 atgtgacacattatagtacaacgaatctggatag 57
|||||||||||| |||||| |||||||| |||||
Sbjct: 90 atgtgacacattctagtactacgaatctagatag 57
>RF00906;MIR1122;AAAA02008343.1/9662-9526 39946:Oryza sativa
Indica Group
Length = 137
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 27 tgacacattatagtacaacgaatctgga 54
||||||||| ||||||||||||||||||
Sbjct: 47 tgacacattctagtacaacgaatctgga 74
>RF00906;MIR1122;AACV01024885.1/21195-21061 39947:Oryza sativa
Japonica Group
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 61 tatgtctagattcgtagtactaggatgtgtcgcatc 96
||||||||||||| | ||||||||||||||| ||||
Sbjct: 77 tatgtctagattcattgtactaggatgtgtcacatc 42
>RF00906;MIR1122;AAAA02001792.1/20100-20254 39946:Oryza sativa
Indica Group
Length = 155
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 gattcgtagtactaggatgtgtcgcatc 96
||||||||||||||||||||||| ||||
Sbjct: 87 gattcgtagtactaggatgtgtcacatc 114
>RF00906;MIR1122;AP008210.1/21918444-21918599 39947:Oryza sativa
Japonica Group
Length = 156
Score = 48.1 bits (24), Expect = 3e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 24 atgtgacacattatagtacaacgaatctggatagaaatatgtctagattcgtagtactag 83
||||||||||| |||||| | |||||| |||| | ||||||| ||||||||| ||||||
Sbjct: 114 atgtgacacatactagtactatgaatctagatatacatatgtccagattcgtaatactag 55
Score = 44.1 bits (22), Expect = 4e-04
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 27 tgacacattatagtacaacgaatctggatagaaatatgtctagattcgtagtactaggat 86
||||| ||| ||||| ||||||||||| | | ||| ||||||||| ||||||||| ||
Sbjct: 46 tgacatattctagtattacgaatctggacatatgtatatctagattcatagtactagtat 105
Query: 87 gtgtcgcatc 96
||||| ||||
Sbjct: 106 gtgtcacatc 115
>RF00906;MIR1122;AAAA02021800.1/3616-3483 39946:Oryza sativa
Indica Group
Length = 134
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 65 tctagattcgtagtactaggatgtgtcgcatc 96
||||||||||||||||||| ||||||| ||||
Sbjct: 75 tctagattcgtagtactagaatgtgtcacatc 44
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 24 atgtgacacattatagtacaacgaatctggatag 57
|||||||||||| |||||| |||||||| |||||
Sbjct: 45 atgtgacacattctagtactacgaatctagatag 78
>RF00906;MIR1122;AAAA02007218.1/59330-59175 39946:Oryza sativa
Indica Group
Length = 156
Score = 48.1 bits (24), Expect = 3e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 37 tagtacaacgaatctggatagaaatatgtctagattcgtagtactaggatgtgtcgcatc 96
|||| ||||||||||||| | | | ||||||||||||| ||| ||||||||||| ||||
Sbjct: 101 tagtgcaacgaatctggacaaatctctgtctagattcgttgtattaggatgtgtcccatc 42
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 40 tacaacgaatctggatagaaatatgtctagattcgtagtactaggatgtgt 90
|||||||||||| || ||| || |||| |||||||| | ||||||||||||
Sbjct: 59 tacaacgaatctagacagagatttgtccagattcgttgcactaggatgtgt 109
>RF00906;MIR1122;AAAA02004035.1/49440-49310 39946:Oryza sativa
Indica Group
Length = 131
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 63 tgtctagattcgtagtactaggatgtg 89
||||||||||| |||||||||||||||
Sbjct: 75 tgtctagattcatagtactaggatgtg 49
>RF00906;MIR1122;AAAA02005541.1/45284-45440 39946:Oryza sativa
Indica Group
Length = 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 36 atagtacaacgaatctggataga 58
|||||||||||||||||||||||
Sbjct: 55 atagtacaacgaatctggataga 77
>RF00906;MIR1122;AACV01013196.1/2181-2029 39947:Oryza sativa
Japonica Group
Length = 153
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 24 atgtgacacattatagtacaacgaatctgga 54
||||||||| |||||||| ||||||||||||
Sbjct: 39 atgtgacactttatagtataacgaatctgga 69
>RF00906;MIR1122;AAAA02035130.1/4826-4960 39946:Oryza sativa
Indica Group
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 28 gacacattatagtacaacgaatctgga 54
|||||||| ||||||||||||||||||
Sbjct: 89 gacacattctagtacaacgaatctgga 63
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 63 tgtctagattcgtagtactaggatgtgtcgcatc 96
|||| |||||||| ||||||| ||||||||||||
Sbjct: 61 tgtccagattcgttgtactagaatgtgtcgcatc 94
>RF00906;MIR1122;AAAA02007456.1/5960-5794 39946:Oryza sativa Indica
Group
Length = 167
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 tatgtctagattcgtagtactaggatg 87
|||||||||||||||||| ||||||||
Sbjct: 101 tatgtctagattcgtagtcctaggatg 127
>RF00906;MIR1122;AP008209.1/30325748-30325904 39947:Oryza sativa
Japonica Group
Length = 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 39 gtacaacgaatctggata-gaaatatgtctagattcgtagtactaggatgtgtcgcatc 96
|||||||||||||||||| |||| ||||| |||||| | |||||| || ||||| ||||
Sbjct: 58 gtacaacgaatctggataggaaacatgtccagattcattgtactatgaagtgtcacatc 116
>RF00906;MIR1122;AP003280.2/146720-146590 39947:Oryza sativa
Japonica Group
Length = 131
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 63 tgtctagattcgtagtactaggatgtg 89
||||||||||| |||||||||||||||
Sbjct: 75 tgtctagattcatagtactaggatgtg 49
>RF00906;MIR1122;AAAA02028930.1/6053-6188 39946:Oryza sativa
Indica Group
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 24 atgtgacacattatagtacaacgaatctgga 54
||||||||||| ||||||||||||||||||
Sbjct: 94 atgtgacacatcctagtacaacgaatctgga 64
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 63 tgtctagattcgtagtactaggatgtgtcgcatc 96
|||| |||||||| ||||||||||||||| ||||
Sbjct: 62 tgtccagattcgttgtactaggatgtgtcacatc 95
>RF00906;MIR1122;EU337975.1/586-742 39946:Oryza sativa Indica Group
Length = 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 24 atgtgacacattatagtacaacgaatctgga 54
||||||||| | |||||||||||||||||||
Sbjct: 115 atgtgacacttcatagtacaacgaatctgga 85
>RF00906;MIR1122;AACV01012603.1/10671-10517 39947:Oryza sativa
Japonica Group
Length = 155
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 24 atgtgacacattatagtacaacgaatctgga 54
|||||||||| |||||||||||||||||||
Sbjct: 44 atgtgacacaacatagtacaacgaatctgga 74
>RF00906;MIR1122;AP008218.1/5877959-5877822 39947:Oryza sativa
Japonica Group
Length = 138
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 24 atgtgacacattatagtacaacgaatctggataga 58
||||||||||| |||||||| |||||||||||||
Sbjct: 43 atgtgacacatcctagtacaatgaatctggataga 77
>RF00906;MIR1122;AAAA02030479.1/4787-4952 39946:Oryza sativa Indica
Group
Length = 166
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 36 atagtacaacgaatctggataga 58
|||||||||||||||||||||||
Sbjct: 113 atagtacaacgaatctggataga 91
>RF00906;MIR1122;AACV01022113.1/70289-70455 39947:Oryza sativa
Japonica Group
Length = 167
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 36 atagtacaacgaatctggataga 58
|||||||||||||||||||||||
Sbjct: 114 atagtacaacgaatctggataga 92
>RF00906;MIR1122;AP003711.3/78857-78701 39947:Oryza sativa
Japonica Group
Length = 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 28 gacacattatagtacaacgaatctgga 54
||||| |||||||||||||||||||||
Sbjct: 47 gacactttatagtacaacgaatctgga 73
>RF00906;MIR1122;AAAA02020253.1/35204-35082 39946:Oryza sativa
Indica Group
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 63 tgtctagattcgtagtactaggatgtgtcgcatcg 97
|||| ||||||||||||||||| |||||| |||||
Sbjct: 49 tgtccagattcgtagtactaggttgtgtcacatcg 83
>RF00906;MIR1122;AL713908.3/140004-139874 4530:Oryza sativa (rice)
Length = 131
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 24 atgtgacacattatagtacaacgaatctgga 54
||||||||||| ||||||||||||||||||
Sbjct: 89 atgtgacacatcctagtacaacgaatctgga 59
>RF00906;MIR1122;AP008209.1/18198148-18198281 39947:Oryza sativa
Japonica Group
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tatgtctagattcgtagtactag 83
|||||||||||||||||||||||
Sbjct: 80 tatgtctagattcgtagtactag 102
>RF00906;MIR1122;AK101131.1/45-161 39947:Oryza sativa Japonica
Group
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 24 atgtgacacattatagtacaacgaatctgga 54
||||||||||| ||||||||||||||||||
Sbjct: 75 atgtgacacatcctagtacaacgaatctgga 45
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 63 tgtctagattcgtagtactaggatgtgtcgcatc 96
|||| |||||||| ||||||||||||||| ||||
Sbjct: 43 tgtccagattcgttgtactaggatgtgtcacatc 76
>RF00906;MIR1122;AL663000.4/107766-107906 39947:Oryza sativa
Japonica Group
Length = 141
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 62 atgtctagattcgtagtactaggatgtgtcgcatc 96
||||||||||||||||| ||||||| |||| ||||
Sbjct: 76 atgtctagattcgtagtcctaggatatgtcacatc 42
>RF00906;MIR1122;AAAA02010965.1/12989-13143 39946:Oryza sativa
Indica Group
Length = 155
Score = 44.1 bits (22), Expect = 4e-04
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 37 tagtacaacgaatctggatagaaatatgtctagattcgtagtactaggat 86
|||||| ||||||||| | || | ||||| |||||||||||||||||||
Sbjct: 100 tagtactacgaatctgaacagggacatgtccagattcgtagtactaggat 51
>RF00906;MIR1122;AAAA02035134.1/58354-58198 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 62/74 (83%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 24 atgtgacacattatagtacaacgaatctggatagaaa-tatgtctagattcgtagtacta 82
|||||||||||| ||||||||| ||| |||||| ||| || || | |||||| |||||
Sbjct: 43 atgtgacacattctagtacaacaaatttggatataaagcatatccaaattcgttatacta 102
Query: 83 ggatgtgtcgcatc 96
||||||||| ||||
Sbjct: 103 ggatgtgtcacatc 116
>RF00906;MIR1122;AAAA02033927.1/2539-2391 39946:Oryza sativa
Indica Group
Length = 149
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 67 tagattcgtagtactaggatgtgtcgcatc 96
|||||||||||||||||||| |||| ||||
Sbjct: 71 tagattcgtagtactaggatatgtcccatc 42
>RF00906;MIR1122;AACV01012113.1/55186-55058 39947:Oryza sativa
Japonica Group
Length = 129
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 63 tgtctagattcgtagtactaggatgtgtcgcatc 96
|||| ||||||||||||||| |||||||| ||||
Sbjct: 76 tgtccagattcgtagtactaagatgtgtcacatc 43
>RF00906;MIR1122;AC134925.4/86794-86934 39947:Oryza sativa Japonica
Group
Length = 141
Score = 44.1 bits (22), Expect = 4e-04
Identities = 52/61 (85%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 59 aatatgtctagattcgtagtactaggatgtgtcgcatcgagt--gttggttttttatggg 116
|||||||| |||||| ||||| || |||||||| |||| || ||||||||||||||||
Sbjct: 66 aatatgtccagattcatagtattatgatgtgtcacatccggtaggttggttttttatggg 125
Query: 117 a 117
|
Sbjct: 126 a 126
>RF00906;MIR1122;AC105262.3/31526-31369 39947:Oryza sativa
Japonica Group
Length = 158
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 65 tctagattcgtagtactaggat 86
||||||||||||||||||||||
Sbjct: 73 tctagattcgtagtactaggat 52
>RF00906;MIR1122;AP008211.1/18929382-18929520 39947:Oryza sativa
Japonica Group
Length = 139
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 70 attcgtagtactaggatgtgtcgcat 95
|||| |||||||||||||||||||||
Sbjct: 72 attcatagtactaggatgtgtcgcat 97
>RF00906;MIR1122;AAAA02027770.1/12261-12396 39946:Oryza sativa
Indica Group
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 63 tgtctagattcgtagtactaggatgtgtcgcatc 96
|||| ||||||||||||||||||| |||| ||||
Sbjct: 62 tgtccagattcgtagtactaggatatgtcacatc 95
>RF00906;MIR1122;AP005416.3/143775-143639 39947:Oryza sativa
Japonica Group
Length = 137
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 60 atatgtctagattcgtagtactaggatgtgtcgcatcg 97
|||||| ||||||||||||| |||||| |||| |||||
Sbjct: 78 atatgtttagattcgtagtattaggatatgtcacatcg 41
>RF00906;MIR1122;AAAA02011008.1/11238-11369 39946:Oryza sativa
Indica Group
Length = 132
Score = 44.1 bits (22), Expect = 4e-04
Identities = 52/62 (83%), Gaps = 5/62 (8%)
Strand = Plus / Plus
Query: 61 tatgtctagattcgtagtactaggatgtgtcgcatcgagt-----gttggttttttatgg 115
|||||| |||||||| ||| ||||||||||| |||| ||| |||||||||||||||
Sbjct: 56 tatgtccagattcgttgtaataggatgtgtcacatctagtcctaggttggttttttatgg 115
Query: 116 ga 117
||
Sbjct: 116 ga 117
>RF00906;MIR1122;AC130604.4/103163-103007 39947:Oryza sativa
Japonica Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 62/74 (83%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 24 atgtgacacattatagtacaacgaatctggataga-aatatgtctagattcgtagtacta 82
|||||||||| |||||| ||||||||||||| | | ||||| |||||| ||||||||
Sbjct: 43 atgtgacacaacttagtactacgaatctggataaagattatgtacagattcatagtacta 102
Query: 83 ggatgtgtcgcatc 96
|| |||||| ||||
Sbjct: 103 ggttgtgtcacatc 116
>RF00906;MIR1122;AAAA02018547.1/31962-31829 39946:Oryza sativa
Indica Group
Length = 134
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 63 tgtctagattcgtagtactaggatgtgtcgcatc 96
||||||||||| |||||||||||| |||| ||||
Sbjct: 60 tgtctagattcatagtactaggatatgtcacatc 93
>RF00906;MIR1122;AL837527.2/76529-76400 4530:Oryza sativa (rice)
Length = 130
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 63 tgtctagattcgtagtactaggatgtgtcgcatc 96
|||| ||||| |||||||||||||||||| ||||
Sbjct: 56 tgtccagattggtagtactaggatgtgtctcatc 89
>RF00906;MIR1122;AC148822.2/9529-9662 39947:Oryza sativa Japonica
Group
Length = 134
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 24 atgtgacacattatagtacaacgaatctggatag 57
|||||| |||| |||||||||||||||||||||
Sbjct: 43 atgtgaaacatcctagtacaacgaatctggatag 76
>RF00906;MIR1122;AACV01022711.1/1348-1205 39947:Oryza sativa
Japonica Group
Length = 144
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 59 aatatgtctagattcgtagtactaggatgtgtcgcatc 96
|||||||| |||||| | ||||||||||||||| ||||
Sbjct: 66 aatatgtccagattcattgtactaggatgtgtcacatc 103
>RF00906;MIR1122;AP008217.1/23244951-23245072 39947:Oryza sativa
Japonica Group
Length = 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 63 tgtctagattcgtagtactaggatgtgtcgcatc 96
|||| |||||||| ||||||||||||||| ||||
Sbjct: 75 tgtccagattcgttgtactaggatgtgtcccatc 42
