miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01007974.1/18422-18267 39947:Oryza sativa
Japonica Group
Length = 156
Score = 91.7 bits (46), Expect = 3e-18
Identities = 92/106 (86%), Gaps = 6/106 (5%)
Strand = Plus / Plus
Query: 46 tgacacattatagtacaacgaatctggatagaaatatgtgtagattcgtagtactaggat 105
||||||||| |||||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct: 46 tgacacattctagtacaacgaatctggacagaggtatgtccagattcgtagtactaggat 105
Query: 106 gtgtcgcatcgagt-----gtt-gttttttatgggacggagggagt 145
||||| |||| ||| ||| |||||||||||||||||||||||
Sbjct: 106 gtgtcacatccagtactaggttggttttttatgggacggagggagt 151
>RF00906;MIR1122;AC092779.5/114881-115036 39947:Oryza sativa
Japonica Group
Length = 156
Score = 67.9 bits (34), Expect = 4e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 46 tgacacattatagtacaacgaatctggatagaaatatgtgtagattcgtagtactaggat 105
|||||||| |||||||||||||||||| || ||| ||| |||||||| ||||||||||
Sbjct: 46 tgacacatcctagtacaacgaatctggacagtaatttgtccagattcgttgtactaggat 105
Query: 106 gtgtcgcatc 115
||||| ||||
Sbjct: 106 gtgtcacatc 115
>RF00906;MIR1122;AACV01010622.1/23023-23178 39947:Oryza sativa
Japonica Group
Length = 156
Score = 67.9 bits (34), Expect = 4e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 46 tgacacattatagtacaacgaatctggatagaaatatgtgtagattcgtagtactaggat 105
||||| ||| ||||| || ||||||||||||| |||||| ||||||||||| |||||||
Sbjct: 46 tgacatattctagtataatgaatctggatagagatatgtccagattcgtagtcctaggat 105
Query: 106 gtgtcgcatc 115
||||| ||||
Sbjct: 106 gtgtcacatc 115
>RF00906;MIR1122;AAAA02003707.1/8900-8747 39946:Oryza sativa Indica
Group
Length = 154
Score = 60.0 bits (30), Expect = 9e-09
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 46 tgacacattatagtacaacgaatctggatagaaatatgtgtagattcgtagtactaggat 105
||||| ||| |||||| | |||| |||||| | |||||| |||||||||||||||||||
Sbjct: 45 tgacatattctagtacgatgaatttggatatatatatgtccagattcgtagtactaggat 104
Query: 106 gtgtcgcatc 115
||||| ||||
Sbjct: 105 gtgtcacatc 114
>RF00906;MIR1122;AACV01012191.1/7968-7814 39947:Oryza sativa
Japonica Group
Length = 155
Score = 60.0 bits (30), Expect = 9e-09
Identities = 56/65 (86%), Gaps = 6/65 (9%)
Strand = Plus / Minus
Query: 87 agattcgtagtactaggatgtgtcgcatcgagtgtt------gttttttatgggacggag 140
|||||||||||||||||||||||| |||| ||| || ||||||||||||||||||
Sbjct: 70 agattcgtagtactaggatgtgtcacatccagtattaggctggttttttatgggacggag 11
Query: 141 ggagt 145
|||||
Sbjct: 10 ggagt 6
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 87 agattcgtagtactaggatgtgtcgcatc 115
|||||||||||||||||||||||| ||||
Sbjct: 86 agattcgtagtactaggatgtgtcacatc 114
>RF00906;MIR1122;AAAA02010900.1/7833-7673 39946:Oryza sativa Indica
Group
Length = 161
Score = 60.0 bits (30), Expect = 9e-09
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 45 ttgacacattatagtacaacgaatctggatagaaatatgtgtagattcgtagtactagga 104
||||||||| |||||| ||||||||||| ||| |||||| |||||| |||||||||||
Sbjct: 113 ttgacacatcctagtactacgaatctggacagatatatgtccagattcatagtactagga 54
Query: 105 tgtgtc 110
| ||||
Sbjct: 53 tatgtc 48
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 agattcgtagtactaggatgtgtc 110
||||||||||||||||||||||||
Sbjct: 88 agattcgtagtactaggatgtgtc 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 134 gttttttatgggacggagggagt 156
>RF00906;MIR1122;AACV01013467.1/37098-37256 39947:Oryza sativa
Japonica Group
Length = 159
Score = 58.0 bits (29), Expect = 4e-08
Identities = 63/72 (87%), Gaps = 3/72 (4%)
Strand = Plus / Minus
Query: 47 gacacattatagtacaacgaatctggatagaaa-ta--tgtgtagattcgtagtactagg 103
||||||| |||||| ||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 113 gacacatcctagtactacgaatctggatagacactacttgtctagattcgtagtactagg 54
Query: 104 atgtgtcgcatc 115
||||||| ||||
Sbjct: 53 atgtgtcccatc 42
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 agattcgtagtactaggatgtgtc 110
||||||||||||||||||||||||
Sbjct: 90 agattcgtagtactaggatgtgtc 113
>RF00906;MIR1122;AACV01017146.1/25916-25760 39947:Oryza sativa
Japonica Group
Length = 157
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 46 tgacacattatagtacaacgaatctgga 73
||||||||||||||||||||||||||||
Sbjct: 112 tgacacattatagtacaacgaatctgga 85
>RF00906;MIR1122;AACV01002075.1/518-362 39947:Oryza sativa Japonica
Group
Length = 157
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 81 atgtgtagattcgtagtactaggatgtgtcgcatc 115
|||| ||||||||||||||||||||||||| ||||
Sbjct: 82 atgtctagattcgtagtactaggatgtgtcccatc 116
>RF00906;MIR1122;AAAA02003606.1/3920-3764 39946:Oryza sativa Indica
Group
Length = 157
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 81 atgtgtagattcgtagtactaggatgtgtcgcatc 115
|||| ||||||||||||||||||||||||| ||||
Sbjct: 82 atgtctagattcgtagtactaggatgtgtcccatc 116
>RF00906;MIR1122;ABRL01001045.1/1775-1911 65489:Oryza barthii
Length = 137
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 46 tgacacattatagtacaacgaatctggata 75
||||||||| ||||||||||||||||||||
Sbjct: 47 tgacacattctagtacaacgaatctggata 76
>RF00906;MIR1122;AP008209.1/35560975-35561101 39947:Oryza sativa
Japonica Group
Length = 127
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 86 tagattcgtagtactaggatgtgtcgcatc 115
||||||||||||||||||||||||| ||||
Sbjct: 71 tagattcgtagtactaggatgtgtcacatc 42
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 28 gttttttatgggacggagggagt 6
>RF00906;MIR1122;AP008212.1/202637-202758 39947:Oryza sativa
Japonica Group
Length = 122
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 86 tagattcgtagtactaggatgtgtcgcatc 115
||||||||||||||||||||||||| ||||
Sbjct: 52 tagattcgtagtactaggatgtgtcacatc 81
>RF00906;MIR1122;AAAA02020247.1/9682-9526 39946:Oryza sativa Indica
Group
Length = 157
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 47 gacacattatagtacaacgaatctggata 75
||||| |||||||||||||||||||||||
Sbjct: 111 gacactttatagtacaacgaatctggata 83
>RF00906;MIR1122;AAAA02017131.1/7123-7250 39946:Oryza sativa Indica
Group
Length = 128
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 121 ttgttttttatgggacggagggagt 145
|||||||||||||||||||||||||
Sbjct: 30 ttgttttttatgggacggagggagt 6
>RF00906;MIR1122;AAAA02035149.1/48296-48436 39946:Oryza sativa
Indica Group
Length = 141
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 tgacacattatagtacaacgaatctggat 74
||||||||| |||||||||||||||||||
Sbjct: 46 tgacacattctagtacaacgaatctggat 74
>RF00906;MIR1122;AACV01012113.1/55186-55058 39947:Oryza sativa
Japonica Group
Length = 129
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 121 ttgttttttatgggacggagggagt 145
|||||||||||||||||||||||||
Sbjct: 100 ttgttttttatgggacggagggagt 124
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 124 ttttttatgggacggagggagt 145
||||||||||||||||||||||
Sbjct: 27 ttttttatgggacggagggagt 6
>RF00906;MIR1122;AAAA02020879.1/5788-5634 39946:Oryza sativa Indica
Group
Length = 155
Score = 50.1 bits (25), Expect = 9e-06
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 46 tgacacattatagtacaacgaatctggatagaaatatgtgtagattcgtagtactaggat 105
||||||||| || ||||| ||||||||||||| |||||| |||||| ||||| ||| ||
Sbjct: 46 tgacacattcta-tacaatgaatctggatagatatatgtccagattcatagtattagaat 104
Query: 106 gtgtc 110
|||||
Sbjct: 105 gtgtc 109
>RF00906;MIR1122;AAAA02011336.1/16807-16694 39946:Oryza sativa
Indica Group
Length = 114
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 87 agattcgtagtactaggatgtgtcgcatc 115
|||||||||||||||||||||||| ||||
Sbjct: 66 agattcgtagtactaggatgtgtcacatc 38
>RF00906;MIR1122;AP001073.1/31422-31289 39947:Oryza sativa Japonica
Group
Length = 134
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 87 agattcgtagtactaggatgtgtcgcatc 115
|||||||||||||||||||||||| ||||
Sbjct: 65 agattcgtagtactaggatgtgtcacatc 93
>RF00906;MIR1122;AACV01023857.1/20372-20486 39947:Oryza sativa
Japonica Group
Length = 115
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 87 agattcgtagtactaggatgtgtcgcatc 115
|||||||||||||||||||||||| ||||
Sbjct: 67 agattcgtagtactaggatgtgtcccatc 95
>RF00906;MIR1122;AC120991.3/108993-108909 39947:Oryza sativa
Japonica Group
Length = 85
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 121 ttgttttttatgggacggagggagt 145
|||||||||||||||||||||||||
Sbjct: 56 ttgttttttatgggacggagggagt 80
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 120 gttgttttttatgggacggagggagt 145
|||| |||||||||||||||||||||
Sbjct: 31 gttgatttttatgggacggagggagt 6
>RF00906;MIR1122;AP003866.3/59767-59922 39947:Oryza sativa Japonica
Group
Length = 156
Score = 50.1 bits (25), Expect = 9e-06
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 47 gacacattatagtacaacgaatctggatagaaatatgtgtagattcgtagtactaggatg 106
|||||||| |||||||||||||||||| || ||| | |||||||| ||||||||| |
Sbjct: 47 gacacattctagtacaacgaatctggacaggggtatatccagattcgttgtactaggaag 106
Query: 107 tgtcgcatc 115
|||| ||||
Sbjct: 107 tgtctcatc 115
>RF00906;MIR1122;AP008209.1/32841988-32841849 39947:Oryza sativa
Japonica Group
Length = 140
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 87 agattcgtagtactaggatgtgtcgcatc 115
|||||||||||||||||||||||| ||||
Sbjct: 70 agattcgtagtactaggatgtgtcccatc 42
>RF00906;MIR1122;ABRL01000294.1/23842-24000 65489:Oryza barthii
Length = 159
Score = 48.1 bits (24), Expect = 4e-05
Identities = 86/106 (81%), Gaps = 3/106 (2%)
Strand = Plus / Plus
Query: 8 tactccctccgtcc---aaaaagtgaatctagctctgtatttgacacattatagtacaac 64
|||||||||||||| ||||| |||||||| ||| || ||||| ||| |||||| |
Sbjct: 5 tactccctccgtcctataaaaaacgaatctagaactggatgtgacatattctagtacgat 64
Query: 65 gaatctggatagaaatatgtgtagattcgtagtactaggatgtgtc 110
||||||||| ||| |||| |||||||||||||||| |||||||
Sbjct: 65 gaatctggacagatgtatgctcagattcgtagtactagaatgtgtc 110
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 120 gttgttttttatgggacggagggagt 145
|||| |||||||||||||||||||||
Sbjct: 129 gttggtttttatgggacggagggagt 154
>RF00906;MIR1122;AAAA02018390.1/16986-17138 39946:Oryza sativa
Indica Group
Length = 153
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 46 tgacacattatagtacaacgaatctgga 73
|||||| |||||||||||||||||||||
Sbjct: 112 tgacactttatagtacaacgaatctgga 85
>RF00906;MIR1122;AAAA02008343.1/9662-9526 39946:Oryza sativa
Indica Group
Length = 137
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 46 tgacacattatagtacaacgaatctgga 73
||||||||| ||||||||||||||||||
Sbjct: 47 tgacacattctagtacaacgaatctgga 74
>RF00906;MIR1122;AAAA02001792.1/20100-20254 39946:Oryza sativa
Indica Group
Length = 155
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 88 gattcgtagtactaggatgtgtcgcatc 115
||||||||||||||||||||||| ||||
Sbjct: 87 gattcgtagtactaggatgtgtcacatc 114
>RF00906;MIR1122;AAAA02032049.1/7937-7781 39946:Oryza sativa Indica
Group
Length = 157
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 46 tgacacattatagtacaacgaatctgga 73
||||||||| ||||||||||||||||||
Sbjct: 112 tgacacattctagtacaacgaatctgga 85
>RF00906;MIR1122;AACV01013846.1/34700-34544 39947:Oryza sativa
Japonica Group
Length = 157
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 46 tgacacattatagtacaacgaatctgga 73
|||||| |||||||||||||||||||||
Sbjct: 46 tgacactttatagtacaacgaatctgga 73
>RF00906;MIR1122;AC037426.12/45307-45458 39947:Oryza sativa Japonica
Group
Length = 152
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 28 gttttttatgggacggagggagt 6
>RF00906;MIR1122;AP008208.1/277556-277420 39947:Oryza sativa
Japonica Group
Length = 137
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 28 gttttttatgggacggagggagt 6
>RF00906;MIR1122;AP008214.1/666276-666163 39947:Oryza sativa
Japonica Group
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 28 gttttttatgggacggagggagt 6
>RF00906;MIR1122;AAAA02005541.1/45284-45440 39946:Oryza sativa
Indica Group
Length = 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 atagtacaacgaatctggataga 77
|||||||||||||||||||||||
Sbjct: 55 atagtacaacgaatctggataga 77
>RF00906;MIR1122;AAAA02026860.1/4609-4722 39946:Oryza sativa Indica
Group
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 87 gttttttatgggacggagggagt 109
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 124 ttttttatgggacggagggagt 145
||||||||||||||||||||||
Sbjct: 27 ttttttatgggacggagggagt 6
>RF00906;MIR1122;AP004566.3/93541-93654 39947:Oryza sativa Japonica
Group
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 87 gttttttatgggacggagggagt 109
>RF00906;MIR1122;AAAA02035130.1/4826-4960 39946:Oryza sativa
Indica Group
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 47 gacacattatagtacaacgaatctgga 73
|||||||| ||||||||||||||||||
Sbjct: 89 gacacattctagtacaacgaatctgga 63
>RF00906;MIR1122;AP008209.1/34072110-34071977 39947:Oryza sativa
Japonica Group
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 107 gttttttatgggacggagggagt 129
>RF00906;MIR1122;AC229932.1/30140-30028 63629:Oryza minuta
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 86 gttttttatgggacggagggagt 108
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 124 ttttttatgggacggagggagt 145
||||||||||||||||||||||
Sbjct: 27 ttttttatgggacggagggagt 6
>RF00906;MIR1122;AP008210.1/21918444-21918599 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 129 gttttttatgggacggagggagt 151
>RF00906;MIR1122;AACV01025590.1/274-429 39947:Oryza sativa Japonica
Group
Length = 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 129 gttttttatgggacggagggagt 151
>RF00906;MIR1122;AC134925.4/86794-86934 39947:Oryza sativa Japonica
Group
Length = 141
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 114 gttttttatgggacggagggagt 136
>RF00906;MIR1122;AP008218.1/22974465-22974372 39947:Oryza sativa
Japonica Group
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 67 gttttttatgggacggagggagt 89
>RF00906;MIR1122;AL512542.2/7629-7514 4530:Oryza sativa (rice)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 81 atgtgtagattcgtagtactaggatgtgtcgcatc 115
|||| ||||||| ||||||||||||||||| ||||
Sbjct: 76 atgtctagattcttagtactaggatgtgtcacatc 42
>RF00906;MIR1122;AAAA02030479.1/4787-4952 39946:Oryza sativa Indica
Group
Length = 166
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 55 atagtacaacgaatctggataga 77
|||||||||||||||||||||||
Sbjct: 113 atagtacaacgaatctggataga 91
>RF00906;MIR1122;AACV01022113.1/70289-70455 39947:Oryza sativa
Japonica Group
Length = 167
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 55 atagtacaacgaatctggataga 77
|||||||||||||||||||||||
Sbjct: 114 atagtacaacgaatctggataga 92
>RF00906;MIR1122;AP003711.3/78857-78701 39947:Oryza sativa
Japonica Group
Length = 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 47 gacacattatagtacaacgaatctgga 73
||||| |||||||||||||||||||||
Sbjct: 47 gacactttatagtacaacgaatctgga 73
>RF00906;MIR1122;AAAA02011008.1/11238-11369 39946:Oryza sativa
Indica Group
Length = 132
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 105 gttttttatgggacggagggagt 127
>RF00906;MIR1122;AACV01016857.1/872-736 39947:Oryza sativa Japonica
Group
Length = 137
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 110 gttttttatgggacggagggagt 132
>RF00906;MIR1122;AAAA02014383.1/51051-51164 39946:Oryza sativa
Indica Group
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 87 gttttttatgggacggagggagt 109
>RF00906;MIR1122;AP002483.1/24463-24606 39947:Oryza sativa Japonica
Group
Length = 144
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 28 gttttttatgggacggagggagt 6
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 117 gttttttatgggacggagggagt 139
>RF00906;MIR1122;AC133007.4/76186-76053 39947:Oryza sativa Japonica
Group
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 28 gttttttatgggacggagggagt 6
>RF00906;MIR1122;AACV01003164.1/19294-19158 39947:Oryza sativa
Japonica Group
Length = 137
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 110 gttttttatgggacggagggagt 132
>RF00906;MIR1122;AP008217.1/3396232-3396120 39947:Oryza sativa
Japonica Group
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 86 gttttttatgggacggagggagt 108
>RF00906;MIR1122;AB206885.1/121-10 39947:Oryza sativa Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 85 gttttttatgggacggagggagt 107
>RF00906;MIR1122;AAAA02036878.1/803-666 39946:Oryza sativa Indica
Group
Length = 138
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 111 gttttttatgggacggagggagt 133
>RF00906;MIR1122;AACV01005006.1/10159-10274 39947:Oryza sativa
Japonica Group
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 28 gttttttatgggacggagggagt 6
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 89 gttttttatgggacggagggagt 111
>RF00906;MIR1122;AAAA02031253.1/370-507 39946:Oryza sativa Indica
Group
Length = 138
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 111 gttttttatgggacggagggagt 133
>RF00906;MIR1122;AAAA02010127.1/111408-111296 39946:Oryza sativa
Indica Group
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 86 gttttttatgggacggagggagt 108
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 124 ttttttatgggacggagggagt 145
||||||||||||||||||||||
Sbjct: 27 ttttttatgggacggagggagt 6
>RF00906;MIR1122;AP008209.1/18198148-18198281 39947:Oryza sativa
Japonica Group
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 28 gttttttatgggacggagggagt 6
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 107 gttttttatgggacggagggagt 129
>RF00906;MIR1122;AP004457.2/96948-96835 39947:Oryza sativa Japonica
Group
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 87 gttttttatgggacggagggagt 109
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 124 ttttttatgggacggagggagt 145
||||||||||||||||||||||
Sbjct: 27 ttttttatgggacggagggagt 6
>RF00906;MIR1122;AAAA02035060.1/17205-17050 39946:Oryza sativa
Indica Group
Length = 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 129 gttttttatgggacggagggagt 151
>RF00906;MIR1122;AP008214.1/23959479-23959591 39947:Oryza sativa
Japonica Group
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 86 gttttttatgggacggagggagt 108
>RF00906;MIR1122;ABRL01000514.1/8970-9117 65489:Oryza barthii
Length = 148
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 81 atgtgtagattcgtagtactaggatgtgtcgcatc 115
|||| ||||||||||||||||||||| ||| ||||
Sbjct: 76 atgtctagattcgtagtactaggatgggtctcatc 42
>RF00906;MIR1122;AAAA02010090.1/14271-14425 39946:Oryza sativa
Indica Group
Length = 155
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 128 gttttttatgggacggagggagt 150
>RF00906;MIR1122;AP004012.3/83493-83639 39947:Oryza sativa Japonica
Group
Length = 147
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 120 gttttttatgggacggagggagt 142
>RF00906;MIR1122;AP006067.3/111180-111270 39947:Oryza sativa
Japonica Group
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 28 gttttttatgggacggagggagt 6
>RF00906;MIR1122;AACV01016060.1/4048-4184 39947:Oryza sativa
Japonica Group
Length = 137
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 110 gttttttatgggacggagggagt 132
>RF00906;MIR1122;AACV01006502.1/3843-3983 39947:Oryza sativa
Japonica Group
Length = 141
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 123 gttttttatgggacggagggagt 145
|||||||||||||||||||||||
Sbjct: 114 gttttttatgggacggagggagt 136
>RF00906;MIR1122;AAAA02027402.1/5650-5805 39946:Oryza sativa Indica
Group
Length = 156
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 82 tgtgtagattcgtagtactaggatgtgtcgcatc 115
||||||| ||||||||| ||||||||||| ||||
Sbjct: 82 tgtgtagtttcgtagtattaggatgtgtcacatc 115
>RF00906;MIR1122;AP008213.1/14562972-14563105 39947:Oryza sativa
Japonica Group
Length = 134
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 86 tagattcgtagtactaggatgtgtcgcatc 115
||||||||||||||||| ||||||| ||||
Sbjct: 62 tagattcgtagtactagaatgtgtcacatc 91
>RF00906;MIR1122;AAAA02004369.1/19477-19347 39946:Oryza sativa
Indica Group
Length = 131
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 86 tagattcgtagtactaggatgt 107
||||||||||||||||||||||
Sbjct: 68 tagattcgtagtactaggatgt 47
>RF00906;MIR1122;AAAA02022804.1/34746-34633 39946:Oryza sativa
Indica Group
Length = 114
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 124 ttttttatgggacggagggagt 145
||||||||||||||||||||||
Sbjct: 27 ttttttatgggacggagggagt 6
>RF00906;MIR1122;AAAA02029204.1/1438-1301 39946:Oryza sativa
Indica Group
Length = 138
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 46 tgacacattatagtacaacgaatctggata 75
||||||||| |||||| |||||||||||||
Sbjct: 46 tgacacattttagtactacgaatctggata 75
>RF00906;MIR1122;AAAA02007310.1/1161-1273 39946:Oryza sativa Indica
Group
Length = 113
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 124 ttttttatgggacggagggagt 145
||||||||||||||||||||||
Sbjct: 27 ttttttatgggacggagggagt 6
>RF00906;MIR1122;AC092389.4/93429-93555 39947:Oryza sativa Japonica
Group
Length = 127
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 124 ttttttatgggacggagggagt 145
||||||||||||||||||||||
Sbjct: 101 ttttttatgggacggagggagt 122
>RF00906;MIR1122;AK288631.1/1276-1390 39947:Oryza sativa Japonica
Group
Length = 115
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 86 tagattcgtagtactaggatgtgtcgcatc 115
||||||||| ||||||||||||||| ||||
Sbjct: 45 tagattcgttgtactaggatgtgtcacatc 74
>RF00906;MIR1122;AAAA02033927.1/2539-2391 39946:Oryza sativa Indica
Group
Length = 149
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 86 tagattcgtagtactaggatgtgtcgcatc 115
|||||||||||||||||||| |||| ||||
Sbjct: 71 tagattcgtagtactaggatatgtcccatc 42
>RF00906;MIR1122;AAAA02021800.1/3616-3483 39946:Oryza sativa Indica
Group
Length = 134
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 86 tagattcgtagtactaggatgtgtcgcatc 115
||||||||||||||||| ||||||| ||||
Sbjct: 73 tagattcgtagtactagaatgtgtcacatc 44
>RF00906;MIR1122;AP008211.1/18929382-18929520 39947:Oryza sativa
Japonica Group
Length = 139
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 89 attcgtagtactaggatgtgtcgcat 114
|||| |||||||||||||||||||||
Sbjct: 72 attcatagtactaggatgtgtcgcat 97
>RF00906;MIR1122;AAAA02003495.1/21560-21672 39946:Oryza sativa
Indica Group
Length = 113
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 124 ttttttatgggacggagggagt 145
||||||||||||||||||||||
Sbjct: 87 ttttttatgggacggagggagt 108
>RF00906;MIR1122;AP005416.3/143775-143639 39947:Oryza sativa
Japonica Group
Length = 137
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 124 ttttttatgggacggagggagt 145
||||||||||||||||||||||
Sbjct: 27 ttttttatgggacggagggagt 6
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 79 atatgtgtagattcgtagtactaggatgtgtcgcatcg 116
|||||| ||||||||||||| |||||| |||| |||||
Sbjct: 78 atatgtttagattcgtagtattaggatatgtcacatcg 41
>RF00906;MIR1122;AAAA02012853.1/6255-6365 39946:Oryza sativa Indica
Group
Length = 111
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 124 ttttttatgggacggagggagt 145
||||||||||||||||||||||
Sbjct: 27 ttttttatgggacggagggagt 6
>RF00906;MIR1122;AP008209.1/29659053-29658899 39947:Oryza sativa
Japonica Group
Length = 155
Score = 44.1 bits (22), Expect = 6e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 56 tagtacaacgaatctggatagaaatatgtgtagattcgtagtactaggat 105
|||||| ||||||||| | || | |||| ||||||||||||||||||||
Sbjct: 56 tagtactacgaatctgaacagggacatgtctagattcgtagtactaggat 105
>RF00906;MIR1122;AAAA02020253.1/35204-35082 39946:Oryza sativa
Indica Group
Length = 123
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 agattcgtagtactaggatgtgtcgcatcg 116
||||||||||||||||| |||||| |||||
Sbjct: 54 agattcgtagtactaggttgtgtcacatcg 83
>RF00906;MIR1122;AAAA02031413.1/6510-6355 39946:Oryza sativa Indica
Group
Length = 156
Score = 44.1 bits (22), Expect = 6e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 62 aacgaatctggatagaaatatgtgtagattcgtagtactaggatgt 107
||||||| | |||||||| ||| ||||||||| ||||||||||||
Sbjct: 62 aacgaatttagatagaaagttgtctagattcgttgtactaggatgt 107
>RF00906;MIR1122;ABRL01002011.1/9416-9570 65489:Oryza barthii
Length = 155
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 121 ttgttttttatgggacggagggagtg 146
|||||| |||||||||||||||||||
Sbjct: 126 ttgtttcttatgggacggagggagtg 151
