miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01026;MIR828;AL078579.1/1211-1310 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 198 bits (100), Expect = 2e-50
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 44 aatgtttcttgcttaaatgagtattccatgtaaaaatgattcactcactcgtatgggtgg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatgtttcttgcttaaatgagtattccatgtaaaaatgattcactcactcgtatgggtgg 60
Query: 104 gttgggttttctcttcatgagatgctcatttgagcaagca 143
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttgggttttctcttcatgagatgctcatttgagcaagca 100
>RF01026;MIR828;AC189237.1/100224-100330 51351:Brassica rapa subsp.
pekinensis
Length = 107
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 113 tctcttcatgagatgctcatttgagcaagca 143
|||||||||||||||||||||| ||||||||
Sbjct: 77 tctcttcatgagatgctcatttaagcaagca 107
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 44 aatgtttcttgcttaaatgagtattccatg 73
||||||||||||||||||| ||||||||||
Sbjct: 1 aatgtttcttgcttaaatgggtattccatg 30
>RF01026;MIR828;AARH01005110.1/228313-228181 3694:Populus
trichocarpa
Length = 133
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 44 aatgtttcttgcttaaatgagtattcca 71
||||||||||||| ||||||||||||||
Sbjct: 1 aatgtttcttgctcaaatgagtattcca 28
>RF01026;MIR828;AARH01006309.1/115016-115141 3694:Populus
trichocarpa
Length = 126
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 44 aatgtttcttgcttaaatgagtattcca 71
||||||||||||| ||||||||||||||
Sbjct: 1 aatgtttcttgctcaaatgagtattcca 28
>RF01026;MIR828;AASG02025329.1/1452-1398 3988:Ricinus communis
(castor bean)
Length = 55
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 44 aatgtttcttgcttaaatgagtattcca 71
||||||||||||| ||||||||||||||
Sbjct: 1 aatgtttcttgctcaaatgagtattcca 28
>RF01026;MIR828;AC166147.11/114792-114710 3880:Medicago truncatula
(barrel medic)
Length = 83
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 44 aatgtttcttgcttaaatgagtattcca 71
||||||||||||| ||||||||||||||
Sbjct: 1 aatgtttcttgctcaaatgagtattcca 28
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 121 tgagatgctcatttgagcaagca 143
|||||||||||||||||||||||
Sbjct: 61 tgagatgctcatttgagcaagca 83
