miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00842;MIR403;AASG02004953.1/3036-2929 3988:Ricinus communis
(castor bean)
Length = 108
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 106 gtgttagattcacgcacaaactcgtgatgtgtct 139
|||||||||||||||||||||||||||| |||||
Sbjct: 75 gtgttagattcacgcacaaactcgtgatctgtct 108
>RF00842;MIR403;AASG02008767.1/6368-6472 3988:Ricinus communis
(castor bean)
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 106 gtgttagattcacgcacaaactcgtgat 133
||||||||||||||||||||||||||||
Sbjct: 72 gtgttagattcacgcacaaactcgtgat 99
>RF00842;MIR403;CAAP02000014.1/37272-37187 29760:Vitis vinifera
Length = 86
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 106 gtgttagattcacgcacaaactcgtgatgtgtct 139
|||||||||||||||||||||||| ||| |||||
Sbjct: 53 gtgttagattcacgcacaaactcgggatctgtct 86
>RF00842;MIR403;AM431810.2/2208-2094 29760:Vitis vinifera
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 108 gttagattcacgcacaaactcgtgat 133
||||||||||||||||||||||||||
Sbjct: 84 gttagattcacgcacaaactcgtgat 109
>RF00842;MIR403;CAAP02002017.1/13776-13691 29760:Vitis vinifera
Length = 86
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 106 gtgttagattcacgcacaaactcgtgatgtgtct 139
|||||||||||||||||||||||| ||| |||||
Sbjct: 53 gtgttagattcacgcacaaactcgggatctgtct 86
>RF00842;MIR403;AARH01004350.1/142675-142577 3694:Populus
trichocarpa
Length = 99
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 108 gttagattcacgcacaaactcgtgatgtgtct 139
|||||||||||||||||||||| ||| |||||
Sbjct: 68 gttagattcacgcacaaactcgcgatctgtct 99
>RF00842;MIR403;AC189416.2/88220-88122 51351:Brassica rapa subsp.
pekinensis
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 109 ttagattcacgcacaaactcgtgatgtgtct 139
|||||||||||||||||||||| || |||||
Sbjct: 69 ttagattcacgcacaaactcgtaatctgtct 99
>RF00842;MIR403;EU549672.1/167-284 3702:Arabidopsis thaliana (thale
cress)
Length = 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 109 ttagattcacgcacaaactcgtgatgtgtct 139
|||||||||||||||||||||| || |||||
Sbjct: 88 ttagattcacgcacaaactcgtaatctgtct 118
>RF00842;MIR403;AARH01001226.1/54332-54202 3694:Populus trichocarpa
Length = 131
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 109 ttagattcacgcacaaactcgtgatgtgtct 139
|||||||||||||||||||||| || |||||
Sbjct: 101 ttagattcacgcacaaactcgtaatctgtct 131
>RF00842;MIR403;CAAP02000653.1/14609-14502 29760:Vitis vinifera
Length = 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 109 ttagattcacgcacaaactcgtgatgtgtct 139
|||||||||||||||||||||| || |||||
Sbjct: 78 ttagattcacgcacaaactcgtaatctgtct 108
>RF00842;MIR403;ABIM01005602.1/13538-13393 3649:Carica papaya
(papaya)
Length = 146
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 110 tagattcacgcacaaactcgtgatgtgtct 139
||||||||||||||||||||| || |||||
Sbjct: 117 tagattcacgcacaaactcgtaatctgtct 146
