miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01007974.1/18422-18267 39947:Oryza sativa
Japonica Group
Length = 156
Score = 50.1 bits (25), Expect = 4e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 41 gtatatccggattcgtagtactaggatgtatcacatc 77
|||| ||| |||||||||||||||||||| |||||||
Sbjct: 79 gtatgtccagattcgtagtactaggatgtgtcacatc 115
>RF00906;MIR1122;AP008209.1/35560975-35561101 39947:Oryza sativa
Japonica Group
Length = 127
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 50 gattcgtagtactaggatgtatcacatc 77
|||||||||||||||||||| |||||||
Sbjct: 69 gattcgtagtactaggatgtgtcacatc 42
>RF00906;MIR1122;AAAA02003707.1/8900-8747 39946:Oryza sativa Indica
Group
Length = 154
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 gattcgtagtactaggatgtatcacatc 77
|||||||||||||||||||| |||||||
Sbjct: 87 gattcgtagtactaggatgtgtcacatc 114
>RF00906;MIR1122;AAAA02001792.1/20100-20254 39946:Oryza sativa
Indica Group
Length = 155
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 gattcgtagtactaggatgtatcacatc 77
|||||||||||||||||||| |||||||
Sbjct: 87 gattcgtagtactaggatgtgtcacatc 114
>RF00906;MIR1122;AAAA02011336.1/16807-16694 39946:Oryza sativa
Indica Group
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 50 gattcgtagtactaggatgtatcacatc 77
|||||||||||||||||||| |||||||
Sbjct: 65 gattcgtagtactaggatgtgtcacatc 38
>RF00906;MIR1122;AP008212.1/202637-202758 39947:Oryza sativa
Japonica Group
Length = 122
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 gattcgtagtactaggatgtatcacatc 77
|||||||||||||||||||| |||||||
Sbjct: 54 gattcgtagtactaggatgtgtcacatc 81
>RF00906;MIR1122;AACV01012191.1/7968-7814 39947:Oryza sativa
Japonica Group
Length = 155
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 50 gattcgtagtactaggatgtatcacatc 77
|||||||||||||||||||| |||||||
Sbjct: 69 gattcgtagtactaggatgtgtcacatc 42
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 gattcgtagtactaggatgtatcacatc 77
|||||||||||||||||||| |||||||
Sbjct: 87 gattcgtagtactaggatgtgtcacatc 114
>RF00906;MIR1122;AP001073.1/31422-31289 39947:Oryza sativa
Japonica Group
Length = 134
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 gattcgtagtactaggatgtatcacatc 77
|||||||||||||||||||| |||||||
Sbjct: 66 gattcgtagtactaggatgtgtcacatc 93
>RF00906;MIR1122;AP008217.1/17152537-17152413 39947:Oryza sativa
Japonica Group
Length = 125
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 50 gattcgtagtactaggatgtatcacatc 77
||||||||||||||| ||||||||||||
Sbjct: 69 gattcgtagtactagcatgtatcacatc 42
>RF00906;MIR1122;AAAA02031413.1/6510-6355 39946:Oryza sativa Indica
Group
Length = 156
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 gattcgtagtactaggatgtatcacatc 77
||||||| ||||||||||||||||||||
Sbjct: 88 gattcgttgtactaggatgtatcacatc 115
>RF00906;MIR1122;AC215820.3/114332-114188 4537:Oryza punctata
Length = 145
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 55 gtagtactaggatgtatcacat 76
||||||||||||||||||||||
Sbjct: 64 gtagtactaggatgtatcacat 43
>RF00906;MIR1122;AACV01023423.1/18495-18379 39947:Oryza sativa
Japonica Group
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 51 attcgtagtactaggatgtatcacat 76
|||||| |||||||||||||||||||
Sbjct: 68 attcgttgtactaggatgtatcacat 43
>RF00906;MIR1122;AACV01013467.1/37098-37256 39947:Oryza sativa
Japonica Group
Length = 159
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 44 tatccggattcgtagtactaggatgt 69
||||| ||||||||||||||||||||
Sbjct: 85 tatccagattcgtagtactaggatgt 110
>RF00906;MIR1122;AC148822.2/9529-9662 39947:Oryza sativa Japonica
Group
Length = 134
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 44 tatccggattcgtagtactaggatgtatcacatc 77
||||| ||||||| |||||||||||| |||||||
Sbjct: 75 tatccagattcgttgtactaggatgtttcacatc 42
>RF00906;MIR1122;AAAA02022559.1/10581-10446 39946:Oryza sativa
Indica Group
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 42/48 (87%), Gaps = 3/48 (6%)
Strand = Plus / Minus
Query: 24 actataaatctagacat---gtatatccggattcgtagtactaggatg 68
||||||||||| ||||| |||||||| |||||||||| ||||||||
Sbjct: 82 actataaatctggacataaggtatatccagattcgtagtcctaggatg 35
