miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 250 bits (126), Expect = 6e-66
Identities = 171/185 (92%), Gaps = 2/185 (1%)
Strand = Plus / Plus
Query: 1 gtagggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctat 60
|||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 10 gtagagctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctat 69
Query: 61 gaatcccataagccctaatccttatatat--aaaaaggatttggttatatggcttacata 118
| ||||||||||||||||||||| || | ||||||||||||||||||||| || ||||
Sbjct: 70 ggatcccataagccctaatccttgtaaagtaaaaaaggatttggttatatggattgcata 129
Query: 119 tctcaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagct 178
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 130 tctcaggagctttaacttgccctttaatggcttttactcttctttggattgaagggagct 189
Query: 179 ctaca 183
|||||
Sbjct: 190 ctaca 194
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 73.8 bits (37), Expect = 7e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 6 gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 65
||||||| ||||||| ||| |||||||||||| ||| ||||||||||||||||| |||
Sbjct: 15 gctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatggatc 74
Query: 66 ccataagcc 74
|||||||||
Sbjct: 75 ccataagcc 83
Score = 69.9 bits (35), Expect = 1e-11
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 115 catatctcaggagctttaacttgccc-tttaattgcttttactcttctttggattgaagg 173
||||||||||||||||| |||| ||| |||||| |||| ||||||||||||||||||||
Sbjct: 130 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 188
Query: 174 gagctct 180
|||||||
Sbjct: 189 gagctct 195
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctctaca 183
|||||||||||||||||||||||
Sbjct: 162 tttggattgaagggagctctaca 184
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctctaca 183
|||||||||||||||||||||||
Sbjct: 162 tttggattgaagggagctctaca 184
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctctaca 183
|||||||||||||||||||||||
Sbjct: 168 tttggattgaagggagctctaca 190
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 161 tttggattgaagggagctctaca 183
|||||||||||||||||||||||
Sbjct: 162 tttggattgaagggagctctaca 184
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 199 tctttggattgaagggagctct 220
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 210 tctttggattgaagggagctct 231
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 ttggattgaagggagctctaca 183
||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctaca 180
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 tctttggattgaagggagctct 180
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
